TCONS_00044174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044174
Unique NameTCONS_00044174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044174 ID=TCONS_00044174|Name=TCONS_00044174|organism=Clytia hemisphaerica|type=transcript|length=715bp
AAGCATGCGACGCCTATGCTAAAAGGAAGGTGAATCCTTGTAACATCTCA
AAAGAGGATAGTGAAAAAAGAGCCAGCTTTGCCGTTAAACCGGTCAAAGT
TGTGATTGAACCATTGAAGAAACAATCTTTGGCTGCCACGACCTTACCTT
CCATTGGTTGTcatacaaaacaaaatatttcacgGCATAAACATCATCAA
ACAACAGTGTCAATCAGAACTGGAACAGATTGCATGCAGAGGAGAAAcaa
accgaaaaaaaatccgaaatCCCTCACCAGTAGTCCGTATTTTAAGAACA
CTGGCAATGGGGATGGGTTGAGAGGGactttcaaaaagtttcaagCAAAG
AAATGCAAAAACGAAATGGGGAGTTATCGATCTACGAAAGTATGCGGACT
TCACCAAACCATCACTTTTGTCCCTCCACAATCACCATATAGTTTAGTGC
AGGAAAATTTGTACCAAAAACCATGGCAATTACTCATTGCCACAATCTTT
CTCAACAAAACTACTGGAAGTGCCGCTCTCCCCATTTTCTGGAAGTTCGT
GGAAAAATACAGCGAACCTGAGAGTGTATTGATGGCCAACCCTGTAGAAA
TAACAAGTAAGTNTAAGTTCGTCGAAAAATACAGCGAACCTGAGAGTGTA
TTGATGGCCAACCCTGTAGAAATAACAAGtaagtttaaaattttaagtCT
ACGGATGTCAAAAGC
Run BLAST on NCBI

protein sequence of TCONS_00044174-protein

>TCONS_00044174-protein ID=TCONS_00044174-protein|Name=TCONS_00044174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
ACDAYAKRKVNPCNISKEDSEKRASFAVKPVKVVIEPLKKQSLAATTLPS
IGCHTKQNISRHKHHQTTVSIRTGTDCMQRRNKPKKNPKSLTSSPYFKNT
GNGDGLRGTFKKFQAKKCKNEMGSYRSTKVCGLHQTITFVPPQSPYSLVQ
ENLYQKPWQLLIATIFLNKTTGSAALPIFWKFVEKYSEPESVLMANPVEI
TSKXKFVEKYSEPESVLMANPVEITSKFKILSLRMSK
Run BLAST on NCBI

transcript from alignment at sc0005112:1..3521+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044174 ID=TCONS_00044174|Name=TCONS_00044174|organism=Clytia hemisphaerica|type=transcript|length=3521bp|location=Sequence derived from alignment at sc0005112:1..3521+ (Clytia hemisphaerica)
AAGCATGCGACGCCTATGCTAAAAGGAAGGTGAATCCTTGTAACATCTCA
AAAGAGGATAGTGAAAAAAGAGCCAGCTTTGCCGTTAAACCGGTCAAAGT
TGTGATTGAACCATTGAAGAAACAATCTTTGGCTGCCACGACCTTACCTT
CCATTGGTTGTcatacaaaacaaaatatttcacgGCATAAACATCATCAA
ACAACAGTGTCAATCAGAACTGGAACAGATTGCATGCAGAGGAGAAAcaa
accgaaaaaaaatccgaaatCCCTCACCAGTAGTCCGTATTTTAAGAACA
CTGGCAATGGGGATGGGTTGAGAGGGactttcaaaaagtttcaaggtaat
GAAACGCTTGAATTGAATATCTTCTCAAATCAAAAACCCTAAAAATCGCA
TCTAGGAATCATGTTTTTTGAAAACTGATACCTCAACAGGGTTAAGCTCA
TTTTCAGTTCATATTTAACAGACTTTCTCACAATGAAACACGCATTGTTT
GGTTAAATATGTGGCTAAATAGAAATATTTAGCCTCAAATTAGGGTTGAA
GGGGNAATTTATAGTGATGTATGTGAAAGGACTAGATCGAAAACAGGTTT
CAAGACCAACACTGTTGGATATGGTATGAacagaaatagaaaattttcac
CGACGAAAATAAAAGAGGAAGGAGAATGTATTGTAAAGCTGCAGAGGAGG
GAAGATAAGACTTCTTTGGAAATACAGCCTCAAATTGTGTTGAACGATAT
TGTCATCAAGAAGGAAGTTGTAGAGGAAAACAATGAATTCATTGTTCAAC
CAACCGTCAAGTATTTGAACAAACATGATTCGGCCCCATCAAGTGAAGAA
CCTATTTCTGATAATATTGCCTCTTCATCTACTATGGAATGCANtgactt
gaaatttggcagaaatgttctctaccataaaaggagttcatagaaaaaaa
tttgggttgatgacgtcattataaaggtgatgacgtcatcacaaactttc
acacttatcgctgaccaatgaaaaagtactagtcaataaaatagaaatta
aagttgaacgaatggagatttttcaattctgttttgaatttctaaaaggc
aaaataaatatatttaacatatttgccggtttttaacatactgataaaat
tgacgtttaaaatccatgcagaaaatgagtaaattttttcaaaaaacaat
gacgtcatttttgatgacgtcagcagtttttgaaaaatttttaaatactt
tttaaaatttattattgatacctaaaacctgtcaaaatttgaagtcagtt
ggatgcctagatcaaaagttatgctacaATTAagcttttgggattttaca
gggttttagctggattttatgatacgcctgcacaaaaaagtcataaaacc
tgatctggtcggtgtataattgtaaaatttggtNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNcccccccccccggggttaaCTGGCAGTAA
AGTTGACCAGCTTTGGTAAAGTAAGAAGTCTTAAAGATCAGTCAAGGCAG
GTTgaataataagcagatattcgacaagaaaaatcggatatcgaaaatta
ttcagtcgagcttgaGTCGAATATCATTAAAGCGAGActgaataattttg
aaattcgaTTTTTCACGTTGAATATATGGTTTATCGTTCACCAATTAGCA
GAAAAGCATTTTAATTTCTCCCTATTTCATTCAGTCTTCATTCAGGCTAC
AAACTACGTACGGAAATGTTAGGTTAATTTCAAAACTGAAGTTTGATATT
TgaggttttgaaaaaagaataagTTTCTTTATGgggttaatatttttttt
ggtaaatttggtcCATTGATTCTAAACACATTAAGCTTTTTTGGGTGCAC
TGGAGCTGATTGGAGAGTAAAGAACTTCATGACTTGTTATAAGCCTGACC
TATTTACGCGACTTTTTGTCTCTGTTCCACcagtttttcttatttttagt
aTGGTTAAAAATATGAGGTTTTACagtttaaccctttccgtgccggcATT
TTCGATCTCTTTGCCGATATCGGCATATTGCGGCATGCAAAatctcgacc
tatttgccagaactttatttttttacttattaTGTTGAATTGTAATTTTT
GGTCGACTAGAAATGTATGAAAATCTGAATAAATATTTGAAGTTCAAAGT
TTCAGGAAAGTATagattcaagatttttttgtccactttttgtccaatag
aaaaaaatatgcttttttCACCAATTGTTCGTCTTCATTTGgggaatttt
taaaagattttaaagccTTTAATCCGCCTGCTTTTTTGTCTTACCTTCCA
AGGAGTGCAATCCATCTGAGGTTGaataattttattcatttttcctTACA
GCAAAGAAATGCAAAAACGAAATGGGGAGTTATCGATCTACGAAAGTATG
CGGACTTCACCAAACCATCACTTTTGTCCCTCCACAATCACCATATAGTT
TAGTGCAGGAAAATTTGTACCAAAAACCATGGCAATTACTCATTGCCACA
ATCTTTCTCAACAAAACTACTGGAAGTGCCGCTCTCCCCATTTTCTGGAA
GTTCGTGGAAAAATACAGCGAACCTGAGAGTGTATTGATGGCCAACCCTG
TAGAAATAACAAGTAAGTNTAAGTTCGTCGAAAAATACAGCGAACCTGAG
AGTGTATTGATGGCCAACCCTGTAGAAATAACAAGtaagtttaaaatttt
aagtCTACGGATGTCAAAAGC

Coding sequence (CDS) from alignment at sc0005112:1..3521+

>TCONS_00044174 ID=TCONS_00044174|Name=TCONS_00044174|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0005112:1..3521+ (Clytia hemisphaerica)
GCATGCGACGCCTATGCTAAAAGGAAGGTGAATCCTTGTAACATCTCAAA
AGAGGATAGTGAAAAAAGAGCCAGCTTTGCCGTTAAACCGGTCAAAGTTG
TGATTGAACCATTGAAGAAACAATCTTTGGCTGCCACGACCTTACCTTCC
ATTGGTTGTcatacaaaacaaaatatttcacgGCATAAACATCATCAAAC
AACAGTGTCAATCAGAACTGGAACAGATTGCATGCAGAGGAGAAAcaaac
cgaaaaaaaatccgaaatCCCTCACCAGTAGTCCGTATTTTAAGAACACT
GGCAATGGGGATGGGTTGAGAGGGactttcaaaaagtttcaagCAAAGAA
ATGCAAAAACGAAATGGGGAGTTATCGATCTACGAAAGTATGCGGACTTC
ACCAAACCATCACTTTTGTCCCTCCACAATCACCATATAGTTTAGTGCAG
GAAAATTTGTACCAAAAACCATGGCAATTACTCATTGCCACAATCTTTCT
CAACAAAACTACTGGAAGTGCCGCTCTCCCCATTTTCTGGAAGTTCGTGG
AAAAATACAGCGAACCTGAGAGTGTATTGATGGCCAACCCTGTAGAAATA
ACAAGTAAGTNTAAGTTCGTCGAAAAATACAGCGAACCTGAGAGTGTATT
GATGGCCAACCCTGTAGAAATAACAAGtaagtttaaaattttaagtCTAC
GGATGTCAAAAGCATGCGACGCCTATGCTAAAAGGAAGGTGAATCCTTGT
AACATCTCAAAAGAGGATAGTGAAAAAAGAGCCAGCTTTGCCGTTAAACC
GGTCAAAGTTGTGATTGAACCATTGAAGAAACAATCTTTGGCTGCCACGA
CCTTACCTTCCATTGGTTGTcatacaaaacaaaatatttcacgGCATAAA
CATCATCAAACAACAGTGTCAATCAGAACTGGAACAGATTGCATGCAGAG
GAGAAAcaaaccgaaaaaaaatccgaaatCCCTCACCAGTAGTCCGTATT
TTAAGAACACTGGCAATGGGGATGGGTTGAGAGGGactttcaaaaagttt
caagCAAAGAAATGCAAAAACGAAATGGGGAGTTATCGATCTACGAAAGT
ATGCGGACTTCACCAAACCATCACTTTTGTCCCTCCACAATCACCATATA
GTTTAGTGCAGGAAAATTTGTACCAAAAACCATGGCAATTACTCATTGCC
ACAATCTTTCTCAACAAAACTACTGGAAGTGCCGCTCTCCCCATTTTCTG
GAAGTTCGTGGAAAAATACAGCGAACCTGAGAGTGTATTGATGGCCAACC
CTGTAGAAATAACAAGTAAGTNTAAGTTCGTCGAAAAATACAGCGAACCT
GAGAGTGTATTGATGGCCAACCCTGTAGAAATAACAAGtaagtttaaaat
tttaagtCTACGGATGTCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027820XLOC_027820Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044174-proteinTCONS_00044174-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044174-exon-sc0005112-1491911889:1..345TCONS_00044174-exon-sc0005112-1491911889:1..345Clytia hemisphaericaexon
TCONS_00044174-exon-sc0005112-1510915933:1..345TCONS_00044174-exon-sc0005112-1510915933:1..345Clytia hemisphaericaexon
TCONS_00044174-exon-sc0005112-1575043694:1..345TCONS_00044174-exon-sc0005112-1575043694:1..345Clytia hemisphaericaexon
TCONS_00044174-exon-sc0005112-1491911889:3152..3521TCONS_00044174-exon-sc0005112-1491911889:3152..3521Clytia hemisphaericaexon
TCONS_00044174-exon-sc0005112-1510915933:3152..3521TCONS_00044174-exon-sc0005112-1510915933:3152..3521Clytia hemisphaericaexon
TCONS_00044174-exon-sc0005112-1575043694:3152..3521TCONS_00044174-exon-sc0005112-1575043694:3152..3521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005112supercontigsc0005112:1..3521 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.21144	5.70218	2.66435	3.66621	3.58955	4.56894	4.15533	4.38627	2.65567	3.96132	3.24588	1.9039	2.57033	2.95904	3.10713	3.58106	4.88382	6.30927	2.11715	2.69059	4.37877	4.11567	23.6624	17.06	4.85066	4.53072	1.74932	1.67268	13.601	16.6941
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011257DNA_glycosylase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00044174 vs. Swiss-Prot (Human)
Match: MBD4 (Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.698e-17
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 3 
Query:  417 FVPPQSPYSLVQENLYQKPWQLLIATIFLNKTTGSAALPIFWKFVEKYSEPESVLMANPVEIT 605
            + PP+SP++LVQE L+  PW+LLIATIFLN+T+G  A+P+ WKF+EKY   E    A+  +++
Sbjct:  438 WTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVS 500
The following BLAST results are available for this feature:
BLAST of TCONS_00044174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MBD41.698e-1750.79Methyl-CpG-binding domain protein 4 OS=Homo sapien... [more]
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