TCONS_00044159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044159
Unique NameTCONS_00044159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044159 ID=TCONS_00044159|Name=TCONS_00044159|organism=Clytia hemisphaerica|type=transcript|length=355bp
gggAAGTCTCCTGGACAAAATTTCTGATCTGGAGTTGACCAAAAACAAAG
TCAAACAAAACCAACAACTTCTCACAATCAACACCCAAGTCTACTAACAT
GTACCAACCTTTAGGGCAAAGGGGTATGCACAAATTATTTAGAATGAGCC
AGTCATATGCCTGGTGTCTTAACAAAACAGTAAAGAAATTCAAGATGAAA
TCTGTGAGGGCTGAATATGGAACTTTCTCAACCTTTGAAATCAAATATAA
AGGAAAAGggtttatttgaaaaatgttgtggTATAAGTCTTTAAATTTGG
GTTGTTGGtgtttgtaccttttttcctgggtggttgtaccttttcctggg
tggtt
Run BLAST on NCBI

protein sequence of TCONS_00044159-protein

>TCONS_00044159-protein ID=TCONS_00044159-protein|Name=TCONS_00044159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
NHPGKGTTTQEKRYKHQQPKFKDLYHNIFQINPFPLYLISKVEKVPYSAL
TDFILNFFTVLLRHQAYDWLILNNLCIPLCPKGWYMLVDLGVDCEKLLVL
FDFVFGQLQIRNFVQETS
Run BLAST on NCBI

transcript from alignment at sc0005085:852..1206

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044159 ID=TCONS_00044159|Name=TCONS_00044159|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0005085:852..1206 (Clytia hemisphaerica)
aaccacccaggaaaaggtacaaccacccaggaaaaaaggtacaaacaCCA
ACAACCCAAATTTAAAGACTTATAccacaacatttttcaaataaaccCTT
TTCCTTTATATTTGATTTCAAAGGTTGAGAAAGTTCCATATTCAGCCCTC
ACAGATTTCATCTTGAATTTCTTTACTGTTTTGTTAAGACACCAGGCATA
TGACTGGCTCATTCTAAATAATTTGTGCATACCCCTTTGCCCTAAAGGTT
GGTACATGTTAGTAGACTTGGGTGTTGATTGTGAGAAGTTGTTGGTTTTG
TTTGACTTTGTTTTTGGTCAACTCCAGATCAGAAATTTTGTCCAGGAGAC
TTccc

Coding sequence (CDS) from alignment at sc0005085:852..1206

>TCONS_00044159 ID=TCONS_00044159|Name=TCONS_00044159|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0005085:852..1206 (Clytia hemisphaerica)
aaccacccaggaaaaggtacaaccacccaggaaaaaaggtacaaacaCCA
ACAACCCAAATTTAAAGACTTATAccacaacatttttcaaataaaccCTT
TTCCTTTATATTTGATTTCAAAGGTTGAGAAAGTTCCATATTCAGCCCTC
ACAGATTTCATCTTGAATTTCTTTACTGTTTTGTTAAGACACCAGGCATA
TGACTGGCTCATTCTAAATAATTTGTGCATACCCCTTTGCCCTAAAGGTT
GGTACATGTTAGTAGACTTGGGTGTTGATTGTGAGAAGTTGTTGGTTTTG
TTTGACTTTGTTTTTGGTCAACTCCAGATCAGAAATTTTGTCCAGGAGAC
TTcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027805XLOC_027805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044159-exon-sc0005085-1491911889:852..1206TCONS_00044159-exon-sc0005085-1491911889:852..1206Clytia hemisphaericaexon
TCONS_00044159-exon-sc0005085-1510915933:852..1206TCONS_00044159-exon-sc0005085-1510915933:852..1206Clytia hemisphaericaexon
TCONS_00044159-exon-sc0005085-1575043694:852..1206TCONS_00044159-exon-sc0005085-1575043694:852..1206Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044159-proteinTCONS_00044159-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005085supercontigsc0005085:852..1206 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.322295	0	2.9709	2.78436	3.73914	2.01367	2.32523	5.11804	1.41055	1.38788	1.67957	1.52066	1.13093	1.9207	3.89431	2.83862	1.07393	2.07836	2.39569	1.83137	0.463688	0.826907	0.608608	0	4.01703	1.48123	2.98543	1.80347
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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