TCONS_00044143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044143
Unique NameTCONS_00044143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044143 ID=TCONS_00044143|Name=TCONS_00044143|organism=Clytia hemisphaerica|type=transcript|length=811bp
CTCCAAGAGTTTGTTTTGTCTTTGTTAGACAGGTCGAAACGTTCCTCAAT
TTTAGCAAACTTATTAGTAGGAACAGTGTCGTCACTTTCTTCGATATTTC
GACGTTTTCTAGACATTTGCTCAGCTGGATCCTGATTTTGGTCCTTTGGA
CTGAGGGTTTGGGAATCTGCATTCAACGGACTCTCGACTTGATCCTTATT
TGTTGAAGCAGAAGTCATTTCGTTCGATTCTTCAGATGCAGGGATGGTAC
TCATTctgaggaaaaaattagaaaaacgcATCTTAGACATTTTATCTTTA
ACTTGAAGAATCAACAAGAAGCccaagggcatgaaggcccagcattaaaa
gttttgtttctaaataagagtgaaatcgtttgcttactcatcaattttaa
tttacaagctttttttattgaattggcacgaatgtggagcaagattggtc
agaaagaggaagagaaaaacattttttgtttataatagCACATGATATTA
GCACaactgatatgaaacatgtgtctgattatgtaaatataaaacttttg
aaaaatctttaacaaacatgtgttaaagctctaaagggagcaaaaacaaa
tgataaaaagtaaaattaaaaagaaaccagCCTCGAAAAATTTCCCTGCA
ACCAGAGCGGCTGCAGCCTCAGCAGcacccaaaaaatgcaaaatttgtat
ataaaaaTGTCCATAAAAACTGAACAATTGTGATCctccaagcgatttta
agtacaTAAAAATCTTTCCGGCAAACATCGGAAAATGATCCGCCAATTTG
CCGGCAATAGT
Run BLAST on NCBI

protein sequence of TCONS_00044143-protein

>TCONS_00044143-protein ID=TCONS_00044143-protein|Name=TCONS_00044143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MPLGFLLILQVKDKMSKMRFSNFFLRMSTIPASEESNEMTSASTNKDQVE
SPLNADSQTLSPKDQNQDPAEQMSRKRRNIEESDDTVPTNKFAKIEERFD
LSNKDKTNSW
Run BLAST on NCBI

transcript from alignment at sc0005061:4017..4827

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044143 ID=TCONS_00044143|Name=TCONS_00044143|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0005061:4017..4827 (Clytia hemisphaerica)
ACTATTGCCGGCAAATTGGCGGATCATTTTCCGATGTTTGCCGGAAAGAT
TTTTAtgtacttaaaatcgcttggagGATCACAATTGTTCAGTTTTTATG
GACAtttttatatacaaattttgcattttttgggtgCTGCTGAGGCTGCA
GCCGCTCTGGTTGCAGGGAAATTTTTCGAGGctggtttctttttaatttt
actttttatcatttgtttttgctccctttagagctttaacacatgtttgt
taaagatttttcaaaagttttatatttacataatcagacacatgtttcat
atcagttGTGCTAATATCATGTGctattataaacaaaaaatgtttttctc
ttcctctttctgaccaatcttgctccacattcgtgccaattcaataaaaa
aagcttgtaaattaaaattgatgagtaagcaaacgatttcactcttattt
agaaacaaaacttttaatgctgggccttcatgcccttggGCTTCTTGTTG
ATTCTTCAAGTTAAAGATAAAATGTCTAAGATgcgtttttctaatttttt
cctcagAATGAGTACCATCCCTGCATCTGAAGAATCGAACGAAATGACTT
CTGCTTCAACAAATAAGGATCAAGTCGAGAGTCCGTTGAATGCAGATTCC
CAAACCCTCAGTCCAAAGGACCAAAATCAGGATCCAGCTGAGCAAATGTC
TAGAAAACGTCGAAATATCGAAGAAAGTGACGACACTGTTCCTACTAATA
AGTTTGCTAAAATTGAGGAACGTTTCGACCTGTCTAACAAAGACAAAACA
AACTCTTGGAG

Coding sequence (CDS) from alignment at sc0005061:4017..4827

>TCONS_00044143 ID=TCONS_00044143|Name=TCONS_00044143|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0005061:4017..4827 (Clytia hemisphaerica)
atgcccttggGCTTCTTGTTGATTCTTCAAGTTAAAGATAAAATGTCTAA
GATgcgtttttctaattttttcctcagAATGAGTACCATCCCTGCATCTG
AAGAATCGAACGAAATGACTTCTGCTTCAACAAATAAGGATCAAGTCGAG
AGTCCGTTGAATGCAGATTCCCAAACCCTCAGTCCAAAGGACCAAAATCA
GGATCCAGCTGAGCAAATGTCTAGAAAACGTCGAAATATCGAAGAAAGTG
ACGACACTGTTCCTACTAATAAGTTTGCTAAAATTGAGGAACGTTTCGAC
CTGTCTAACAAAGACAAAACAAACTCTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027790XLOC_027790Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044143-proteinTCONS_00044143-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044143-exon-sc0005061-1491911889:4017..4827TCONS_00044143-exon-sc0005061-1491911889:4017..4827Clytia hemisphaericaexon
TCONS_00044143-exon-sc0005061-1510915933:4017..4827TCONS_00044143-exon-sc0005061-1510915933:4017..4827Clytia hemisphaericaexon
TCONS_00044143-exon-sc0005061-1575043694:4017..4827TCONS_00044143-exon-sc0005061-1575043694:4017..4827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005061supercontigsc0005061:4017..4827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27617	1.18445	2.12756	1.5879	15.7479	16.6571	5.20176	5.87021	2.19389	2.3374	2.78752	3.91662	2.5498	1.93804	2.27434	2.1456	1.78046	2.91577	5.0822	3.53289	2.66576	2.72028	1.19053	1.9977	0.949108	0.976956	2.9225	2.71522	2.32473	1.52245
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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