TCONS_00044134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044134
Unique NameTCONS_00044134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044134 ID=TCONS_00044134|Name=TCONS_00044134|organism=Clytia hemisphaerica|type=transcript|length=511bp
ATTTCGGCTCGGGGCTGCAGTTGCTTAGGATTTTCcggatttcagccaaa
aagttGCTTATggattttgagccaaaaatgccTAGCaacttcaaaatttt
ggctttttatttcaatttatgTCCAAAATGcctcaaatttggtatttaAT
TGCCATCAGTACACATTTTAATGCCTAATTATACCGAAAATTCCGCTTAT
TTAGGCTTTTTTGGCTGCTTTCCCGGTTCATCCTTAGTTGCAGGGCTAGG
CTGCTAAGGCCAAGttgcttaattttttggccatagCAGCTCGGTTGCTT
GTAATGGTATCGATCTTTCAAAAGTCGAAAATAcgaaaaaaaacctttta
cCTGCAGTCTTTGACCCATAAATCTTTTACCAGGCCTTAGCAGCGGACCC
TCCTCGCGAAACGACTTCAATCACATTcaacttttgaaagaaattcaatt
ccatttcaaaatttaactttaCTTGTTTACAGAAAGACGAAGAAATACAT
TTTTACTTCGG
Run BLAST on NCBI

transcript from alignment at sc0005039:2188..2698

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044134 ID=TCONS_00044134|Name=TCONS_00044134|organism=Clytia hemisphaerica|type=transcript|length=511bp|location=Sequence derived from alignment at sc0005039:2188..2698 (Clytia hemisphaerica)
CCGAAGTAAAAATGTATTTCTTCGTCTTTCTGTAAACAAGtaaagttaaa
ttttgaaatggaattgaatttctttcaaaagttgAATGTGATTGAAGTCG
TTTCGCGAGGAGGGTCCGCTGCTAAGGCCTGGTAAAAGATTTATGGGTCA
AAGACTGCAGgtaaaaggttttttttcgTATTTTCGACTTTTGAAAGATC
GATACCATTACAAGCAACCGAGCTGctatggccaaaaaattaagcaaCTT
GGCCTTAGCAGCCTAGCCCTGCAACTAAGGATGAACCGGGAAAGCAGCCA
AAAAAGCCTAAATAAGCGGAATTTTCGGTATAATTAGGCATTAAAATGTG
TACTGATGGCAATtaaataccaaatttgaggCATTTTGGAcataaattga
aataaaaagccaaaattttgaagttGCTAggcatttttggctcaaaatcc
ATAAGCaactttttggctgaaatccgGAAAATCCTAAGCAACTGCAGCCC
CGAGCCGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027781XLOC_027781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044134-exon-sc0005039-1491911889:2188..2698TCONS_00044134-exon-sc0005039-1491911889:2188..2698Clytia hemisphaericaexon
TCONS_00044134-exon-sc0005039-1510915933:2188..2698TCONS_00044134-exon-sc0005039-1510915933:2188..2698Clytia hemisphaericaexon
TCONS_00044134-exon-sc0005039-1575043694:2188..2698TCONS_00044134-exon-sc0005039-1575043694:2188..2698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005039supercontigsc0005039:2188..2698 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.352428	0.116463	1.0641	1.17119	0	0	0.151034	0	0.11366	0.122621	0	0	0.0781296	0	0	0	0.176378	0	0	0.130677	0	0	0	0	0	0	0	0	0	0.272366
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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