TCONS_00044121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044121
Unique NameTCONS_00044121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044121 ID=TCONS_00044121|Name=TCONS_00044121|organism=Clytia hemisphaerica|type=transcript|length=435bp
ATATCATATCATGACAAACAAACTATTCGCCATAGCTTTCAGCATCAAAG
GCTTTCCTAGCTTTCTTCAACTCTTCGTTCATGGTCAACAGTTCTTTAac
acgagcatatttcttaggATCCTTCctaatcaaataaacaatatCCTCTA
CATGGACACGCCCTTTTTTCCCAACGTTCATAGCTTTGACAGTTGTGTTT
GTGATGAACTGTATAAGCAGGTCATCCAACATTTCGACTGTCTCCGTGTA
AGGGACTTGTTCATCACCGAAACCATACAACATACAACGAATCTCTTTGG
TAAACAAACGTTTCTTTTTATCAGAACTGGATGATACCCCTTCATTTTCA
GTATCATGTGCTCCATCTGATTCTTCCATTTTTGttgattaatttttgtt
ttttgttttcacactgaaaaataaaagttgaaatg
Run BLAST on NCBI

protein sequence of TCONS_00044121-protein

>TCONS_00044121-protein ID=TCONS_00044121-protein|Name=TCONS_00044121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MEESDGAHDTENEGVSSSSDKKKRLFTKEIRCMLYGFGDEQVPYTETVEM
LDDLLIQFITNTTVKAMNVGKKGRVHVEDIVYLIRKDPKKYARVKELLTM
NEELKKARKAFDAESYGE
Run BLAST on NCBI

transcript from alignment at sc0004999:4670..5104

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044121 ID=TCONS_00044121|Name=TCONS_00044121|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at sc0004999:4670..5104 (Clytia hemisphaerica)
catttcaacttttatttttcagtgtgaaaacaaaaaacaaaaattaatca
aCAAAAATGGAAGAATCAGATGGAGCACATGATACTGAAAATGAAGGGGT
ATCATCCAGTTCTGATAAAAAGAAACGTTTGTTTACCAAAGAGATTCGTT
GTATGTTGTATGGTTTCGGTGATGAACAAGTCCCTTACACGGAGACAGTC
GAAATGTTGGATGACCTGCTTATACAGTTCATCACAAACACAACTGTCAA
AGCTATGAACGTTGGGAAAAAAGGGCGTGTCCATGTAGAGGatattgttt
atttgattagGAAGGATcctaagaaatatgctcgtgtTAAAGAACTGTTG
ACCATGAACGAAGAGTTGAAGAAAGCTAGGAAAGCCTTTGATGCTGAAAG
CTATGGCGAATAGTTTGTTTGTCATGATATGATAT

Coding sequence (CDS) from alignment at sc0004999:4670..5104

>TCONS_00044121 ID=TCONS_00044121|Name=TCONS_00044121|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0004999:4670..5104 (Clytia hemisphaerica)
ATGGAAGAATCAGATGGAGCACATGATACTGAAAATGAAGGGGTATCATC
CAGTTCTGATAAAAAGAAACGTTTGTTTACCAAAGAGATTCGTTGTATGT
TGTATGGTTTCGGTGATGAACAAGTCCCTTACACGGAGACAGTCGAAATG
TTGGATGACCTGCTTATACAGTTCATCACAAACACAACTGTCAAAGCTAT
GAACGTTGGGAAAAAAGGGCGTGTCCATGTAGAGGatattgtttatttga
ttagGAAGGATcctaagaaatatgctcgtgtTAAAGAACTGTTGACCATG
AACGAAGAGTTGAAGAAAGCTAGGAAAGCCTTTGATGCTGAAAGCTATGG
CGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027768XLOC_027768Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044121-proteinTCONS_00044121-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044121-exon-sc0004999-1491911889:4670..5104TCONS_00044121-exon-sc0004999-1491911889:4670..5104Clytia hemisphaericaexon
TCONS_00044121-exon-sc0004999-1510915933:4670..5104TCONS_00044121-exon-sc0004999-1510915933:4670..5104Clytia hemisphaericaexon
TCONS_00044121-exon-sc0004999-1575043694:4670..5104TCONS_00044121-exon-sc0004999-1575043694:4670..5104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004999supercontigsc0004999:4670..5104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
74.6024	61.5284	115.25	117.319	30.4582	18.5706	11.4486	12.461	15.401	13.6946	16.3629	14.4354	4.91238	4.51173	9.05082	8.22056	13.3394	15.496	4.54471	6.65301	11.614	11.7468	33.141	27.3804	7.1879	5.9687	13.224	11.1009	17.1035	15.0734
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003195TFIID_TAF13
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006366 transcription from RNA polymerase II promoter
molecular_function GO:0046982 protein heterodimerization activity
Blast
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BLAST of TCONS_00044121 vs. Swiss-Prot (Human)
Match: TAF13 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens GN=TAF13 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.316e-49
Identity = 69/97 (71.13%), Postives = 90/97 (92.78%), Query Frame = -3 
Query:   29 KKKRLFTKEIRCMLYGFGDEQVPYTETVEMLDDLLIQFITNTTVKAMNVGKKGRVHVEDIVYLIRKDPKKYARVKELLTMNEELKKARKAFDAESYG 319
            K+KRLF+KE+RCM+YGFGD+Q PYTE+V++L+DL+I+FIT  T KAM++G++GRV VEDIV+LIRKDP+K+ARVK+LLTMNEELK+ARKAFD  +YG
Sbjct:   27 KRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANYG 123
The following BLAST results are available for this feature:
BLAST of TCONS_00044121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF137.316e-4971.13Transcription initiation factor TFIID subunit 13 O... [more]
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