TCONS_00044100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044100
Unique NameTCONS_00044100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044100 ID=TCONS_00044100|Name=TCONS_00044100|organism=Clytia hemisphaerica|type=transcript|length=491bp
TAAAAAACCAAACAATGACTTGATTGTTGGTCAACACTCAGGTTTAGCTT
CTACCTCGACGGCACATCGACATCTCAACATGGCTTACGTTGTAGTATTT
TTCCTCCCGTTTTTAATTGGACTATCCAACGCAGATGACTTTTTCCAAAT
TGCACCAACAGACGTTAACATCTATTACGACACGCCCAAAAAATTCGAAC
GCTATTGTATACCTCCTAGCCAATCAGATTTCGTTATCACATGGTGGAGA
GATGATAAACGACTTGGTTCCCAGGACAAACCCAACGCCAACACAAATAT
CCCTTCTCGAattaaaataactgaaacaagtGATTTGCAGAGTACTAAAT
GGCATAGTGTTACCCCCGGCTCAAAGATCTCTTTACTGCGAATCAACAGT
GTTTTGCCAACTGATCAGGGGGAATACAGTTGTGTTGCCACAAACAAAAG
TGGTCATTTTTCAGCTAAATTTGATGTGAAAGTTACAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00044100-protein

>TCONS_00044100-protein ID=TCONS_00044100-protein|Name=TCONS_00044100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
KKPNNDLIVGQHSGLASTSTAHRHLNMAYVVVFFLPFLIGLSNADDFFQI
APTDVNIYYDTPKKFERYCIPPSQSDFVITWWRDDKRLGSQDKPNANTNI
PSRIKITETSDLQSTKWHSVTPGSKISLLRINSVLPTDQGEYSCVATNKS
GHFSAKFDVKVTG
Run BLAST on NCBI

transcript from alignment at sc0004969:4126..5144-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044100 ID=TCONS_00044100|Name=TCONS_00044100|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at sc0004969:4126..5144- (Clytia hemisphaerica)
TAAAAAACCAAACAATGACTTGATTGTTGGTCAACACTCAGGTTTAGCTT
CTACCTCGACGGCACATCGACATCTCAACATGGCTTACGTTGTAGTATTT
TTCCTCCCGTTTTTAATTGGTAGGTTGAACCAATTCATCATTTTGCACTA
GTTAGGACATGTACTAACTGGAAACGATATAGAAATTTTTGGCTACCTTA
TTAGAGAGCTTGGTGCAGCCCAAGCGGCACACAACTTGAATCAACGTTTT
GGCTGATTTGGAAAAAAAACTTTAACGAAATTTGACTACTGAATTATTGA
GCATAAAGAAGAGGTGTATAATACTTCAATGGATTGTGATTGGAAACACT
CTATATAGTGGCTAAATTTCGTCAAAGCTTCTTTTCTACCCCGCTAAAAA
GTTGATAAAATTGTGTAATATTATCAGTGTTAAAAGTTCCTCCTTTTTAA
CGAACCATATAAAGGAGGCTTTTCTGTTTTAAAAATTGTACACGATTCAC
CAAAACTTCAAGAATATGTGCTAATTTGCTGTGTTAAATCAATTTTCCGT
CACAGAAATTATAAAACTTCAAANACGTTTTGGCTGATTTGGAAAAAAAG
CTTTAACGAAATTTACTGAATTATTGAGCATACTATTGTTATTATAGGAC
TATCCAACGCAGATGACTTTTTCCAAATTGCACCAACAGACGTTAACATC
TATTACGACACGCCCAAAAAATTCGAACGCTATTGTATACCTCCTAGCCA
ATCAGATTTCGTTATCACATGGTGGAGAGATGATAAACGACTTGGTTCCC
AGGACAAACCCAACGCCAACACAAATATCCCTTCTCGAATTAAAATAACT
GAAACAAGTGATTTGCAGAGTACTAAATGGCATAGTGTTACCCCCGGCTC
AAAGATCTCTTTACTGCGAATCAACAGTGTTTTGCCAACTGATCAGGGGG
AATACAGTTGTGTTGCCACAAACAAAAGTGGTCATTTTTCAGCTAAATTT
GATGTGAAAGTTACAGGTA

Coding sequence (CDS) from alignment at sc0004969:4126..5144-

>TCONS_00044100 ID=TCONS_00044100|Name=TCONS_00044100|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0004969:4126..5144- (Clytia hemisphaerica)
GACTATCCAACGCAGATGACTTTTTCCAAATTGCACCAACAGACGTTAAC
ATCTATTACGACACGCCCAAAAAATTCGAACGCTATTGTATACCTCCTAG
CCAATCAGATTTCGTTATCACATGGTGGAGAGATGATAAACGACTTGGTT
CCCAGGACAAACCCAACGCCAACACAAATATCCCTTCTCGAATTAAAATA
ACTGAAACAAGTGATTTGCAGAGTACTAAATGGCATAGTGTTACCCCCGG
CTCAAAGATCTCTTTACTGCGAATCAACAGTGTTTTGCCAACTGATCAGG
GGGAATACAGTTGTGTTGCCACAAACAAAAGTGGTCATTTTTCAGCTAAA
TTTGATGTGAAAGTTACAGGTAAAAAACCAAACAATGACTTGATTGTTGG
TCAACACTCAGGTTTAGCTTCTACCTCGACGGCACATCGACATCTCAACA
TGGCTTACGTTGTAGTATTTTTCCTCCCGTTTTTAATTGGACTATCCAAC
GCAGATGACTTTTTCCAAATTGCACCAACAGACGTTAACATCTATTACGA
CACGCCCAAAAAATTCGAACGCTATTGTATACCTCCTAGCCAATCAGATT
TCGTTATCACATGGTGGAGAGATGATAAACGACTTGGTTCCCAGGACAAA
CCCAACGCCAACACAAATATCCCTTCTCGAATTAAAATAACTGAAACAAG
TGATTTGCAGAGTACTAAATGGCATAGTGTTACCCCCGGCTCAAAGATCT
CTTTACTGCGAATCAACAGTGTTTTGCCAACTGATCAGGGGGAATACAGT
TGTGTTGCCACAAACAAAAGTGGTCATTTTTCAGCTAAATTTGATGTGAA
AGTTACAGGTAAAAAACCAAACAATGACTTGATTGTTGGTCAACACTCAG
GTTTAGCTTCTACCTCGACGGCACATCGACATCTCAACATGGCTTACGTT
GTAGTATTTTTCCTCCCGTTTTTAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027749XLOC_027749Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044100-proteinTCONS_00044100-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044100-exon-sc0004969-1575043694:5026..5144TCONS_00044100-exon-sc0004969-1575043694:5026..5144Clytia hemisphaericaexon
TCONS_00044100-exon-sc0004969-1575043694:4126..4497TCONS_00044100-exon-sc0004969-1575043694:4126..4497Clytia hemisphaericaexon
TCONS_00044100-exon-sc0004969-1510915933:5026..5144TCONS_00044100-exon-sc0004969-1510915933:5026..5144Clytia hemisphaericaexon
TCONS_00044100-exon-sc0004969-1510915933:4126..4497TCONS_00044100-exon-sc0004969-1510915933:4126..4497Clytia hemisphaericaexon
TCONS_00044100-exon-sc0004969-1491911889:5026..5144TCONS_00044100-exon-sc0004969-1491911889:5026..5144Clytia hemisphaericaexon
TCONS_00044100-exon-sc0004969-1491911889:4126..4497TCONS_00044100-exon-sc0004969-1491911889:4126..4497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004969supercontigsc0004969:4126..5144 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19824	1.169	2.36886	1.67187	0	0	0	0	0	0	0	0	3.72685	2.58811	0	0	15.3656	32.8783	10.1351	17.1621	15.159	17.0656	11.3517	14.9866	3.72864	4.75708	1.15225	0.668393	0.279273	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR013098Ig_I-set
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top