TCONS_00044099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044099
Unique NameTCONS_00044099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044099 ID=TCONS_00044099|Name=TCONS_00044099|organism=Clytia hemisphaerica|type=transcript|length=1873bp
ACGAGAACCGGAAATGTATCATGAACGTAAAAGACGACATTCCGATCATG
AACTTGATGATGAAATACACCATCGTTATCGCTACTCTGATCCTAATTTC
CCTCGCTCACATCATCCAAATCATAGGCCTAACAGAGTCGAGCGACGTAG
TAGTACCAGTGACTATCCAGTTTTTCATCATAAGAAAGCAAGTCCGACAG
CCGACAACCGTTTGTCACTGTATGAAGAAAATGCACGTAAATTTGCTGAA
GAGCGATTGAAAGTTCTTGATCGTTTTCATTTCGGTCGCGATGCAAGTTT
ATTCAGACGTCATGGCTCGCCCGGGCCGTACGACCGGTACGAAGTGAGTC
CTGGTCACGCATCTTCGAAACATAAAGACCATCACAGGGACTCTCCTTCA
CATCAAAGAAGTTATAAAAATAATAGAATGCCTCATTATGACCATGAGGA
AGGTGGGTCACCATCTCGACCACATTCACACCATAGTGACGAGTCAACTA
AAGACCTACACCGTACACCTGCTATCGTTCTCAGTACGAACTACTTACCA
AAAGCACCTCAACGTGATGTCTCACCTCGccctcaacaacaacaaaaagc
aGAAGAACCAACGTGTTACATGTATAGGCGTTATTCACCCATGATTAGTG
TCTCAACACAAACAGAGGTGCAATCTAATGGAGATAATATCCAGAAATAT
CCAGTAAACTCTCCTCAAAGTAGTAGCAACGGGGAAACTAACGATAACAC
ATCTATAAGAGATGAAATTAAAGCTGAAGAAAGCATTGATAATAATATTG
AAAACACACCTGTTGTTGAATCTAACTATCGTAAAAATTGGAAAGTACCA
AGTCCTATTAATACGAAGTTTGAAGAAGAGCATTTTAAATACCATAATGG
TAACCATCGAGAATCATCACCAAGAGGATCGCCTACAGACCATGGGAATT
CACTCAGTATAAACAAATTCGGCTGTGTTGAGACTATAGAGTCTCCGTCA
GGGACAGGAACTGTGGTAGTTTACCCTAAAGAGATTGTTTAAAAGgaatt
tgttggtttttgatgCGTGGTAGAgccttaaatttttaaatttttttatt
tttgtataatAGATGGATGTATACCATATTACGTATAAGGAGGAAATGAT
GTTATTGTAGGTACTAGATATGTATGGATCTGGTTTTTCTGAGTACCGCA
AATCGCAAGCTTTTGTCTGTCCAAAAAGTAATCTTTATCGATACCATACA
TGTGAGTCTTTGTAtcatatttttcgtttttcgatTCTATTTTTCCTGAT
AGAGACTTAACCGCTTTTCTAAAtgtcaattcaatttttctcaaacAAAA
TGTATTGAAGAGATGGTCTCGGGCGTCAGCACCTCAAACCAGGCGTTTGC
GGTTCAGAATCCCCGCTCCTTTCAATGTTCCGCTAACTTCATCGTTAGGG
TAGGTAGCTGGCCGTGGACcctgtgaaaacaatcgaaagactgtctaaaa
gtcttagattactgggctatcatCCACTTTAAATATCgattctatctatc
tatctagcCTATTATTGTCATACTATGAAAATATTGGCGTTTATTTTTTG
TGTTAGTTATAATTTGTGATGGAGTATATTAGATGTATTATGTATTATAT
ATTGTTATTTGTTATTATGGTCGCGTTATTATATATCATTATTTTGTATC
TTGTAATATAAATTTGAAAGTGTTAACGATTTATGCCTAGTTTTATTATG
TCAAGTGCTGATATTTAGCCCTTTTATTATACATGTCCCTTATAAAAGAA
TTTGGGGAATATTTTATGTAAATGAGAAATATTAGATGGTTTACAGTTTA
TTTTTTACAATAGAAGATAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00044099-protein

>TCONS_00044099-protein ID=TCONS_00044099-protein|Name=TCONS_00044099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
REPEMYHERKRRHSDHELDDEIHHRYRYSDPNFPRSHHPNHRPNRVERRS
STSDYPVFHHKKASPTADNRLSLYEENARKFAEERLKVLDRFHFGRDASL
FRRHGSPGPYDRYEVSPGHASSKHKDHHRDSPSHQRSYKNNRMPHYDHEE
GGSPSRPHSHHSDESTKDLHRTPAIVLSTNYLPKAPQRDVSPRPQQQQKA
EEPTCYMYRRYSPMISVSTQTEVQSNGDNIQKYPVNSPQSSSNGETNDNT
SIRDEIKAEESIDNNIENTPVVESNYRKNWKVPSPINTKFEEEHFKYHNG
NHRESSPRGSPTDHGNSLSINKFGCVETIESPSGTGTVVVYPKEIV
Run BLAST on NCBI

transcript from alignment at sc0004968:3215..5147-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044099 ID=TCONS_00044099|Name=TCONS_00044099|organism=Clytia hemisphaerica|type=transcript|length=1933bp|location=Sequence derived from alignment at sc0004968:3215..5147- (Clytia hemisphaerica)
ACGAGAACCGGAAATGTATCATGAACGTAAAAGACGACATTCCGATCATG
AACTTGATGATGAAATACACCATCGTTATCGCTACTCTGATCCTAATTTC
CCTCGCTCACATCATCCAAATCATAGGCCTAACAGAGTCGAGCGACGTAG
TAGTACCAGTGACTATCCAGTTTTTCATCATAAGAAAGCAAGTCCGACAG
CCGACAACCGTTTGTCACTGTATGAAGAAAATGCACGTAAATTTGCTGAA
GAGCGATTGAAAGTTCTTGATCGTTTTCATTTCGGTCGCGATGCAAGTTT
ATTCAGACGTCATGGCTCGCCCGGGCCGTACGACCGGTACGAAGTGAGTC
CTGGTCACGCATCTTCGAAACATAAAGACCATCACAGGGACTCTCCTTCA
CATCAAAGAAGTTATAAAAATAATAGAATGCCTCATTATGACCATGAGGA
AGGTGGGNCACGTCAAAGAATTTATGAAAATAATAGAATGCCTCATTATG
ACCATGAAGAAGGTGGGTCACCATCTCGACCACATTCACACCATAGTGAC
GAGTCAACTAAAGACCTACACCGTACACCTGCTATCGTTCTCAGTACGAA
CTACTTACCAAAAGCACCTCAACGTGATGTCTCACCTCGCCCTCAACAAC
AACAAAAAGCAGAAGAACCAACGTGTTACATGTATAGGCGTTATTCACCC
ATGATTAGTGTCTCAACACAAACAGAGGTGCAATCTAATGGAGATAATAT
CCAGAAATATCCAGTAAACTCTCCTCAAAGTAGTAGCAACGGGGAAACTA
ACGATAACACATCTATAAGAGATGAAATTAAAGCTGAAGAAAGCATTGAT
AATAATATTGAAAACACACCTGTTGTTGAATCTAACTATCGTAAAAATTG
GAAAGTACCAAGTCCTATTAATACGAAGTTTGAAGAAGAGCATTTTAAAT
ACCATAATGGTAACCATCGAGAATCATCACCAAGAGGATCGCCTACAGAC
CATGGGAATTCACTCAGTATAAACAAATTCGGCTGTGTTGAGACTATAGA
GTCTCCGTCAGGGACAGGAACTGTGGTAGTTTACCCTAAAGAGATTGTTT
AAAAGGAATTTGTTGGTTTTTGATGCGTGGTAGAGCCTTAAATTTTTAAA
TTTTTTTATTTTTGTATAATAGATGGATGTATACCATATTACGTATAAGG
AGGAAATGATGTTATTGTAGGTACTAGATATGTATGGATCTGGTTTTTCT
GAGTACCGCAAATCGCAAGCTTTTGTCTGTCCAAAAAGTAATCTTTATCG
ATACCATACATGTGAGTCTTTGTATCATATTTTTCGTTTTTCGATTCTAT
TTTTCCTGATAGAGACTTAACCGCTTTTCTAAATGTCAATTCAATTTTTC
TCAAACAAAATGTATTGAAGAGATGGTCTCGGGCGTCAGCACCTCAAACC
AGGCGTTTGCGGTTCAGAATCCCCGCTCCTTTCAATGTTCCGCTAACTTC
ATCGTTAGGGTAGGTAGCTGGCCGTGGACCCTGTGAAAACAATCGAAAGA
CTGTCTAAAAGTCTTAGATTACTGGGCTATCATCCACTTTAAATATCGAT
TCTATCTATCTATCTAGCCTATTATTGTCATACTATGAAAATATTGGCGT
TTATTTTTTGTGTTAGTTATAATTTGTGATGGAGTATATTAGATGTATTA
TGTATTATATATTGTTATTTGTTATTATGGTCGCGTTATTATATATCATT
ATTTTGTATCTTGTAATATAAATTTGAAAGTGTTAACGATTTATGCCTAG
TTTTATTATGTCAAGTGCTGATATTTAGCCCTTTTATTATACATGTCCCT
TATAAAAGAATTTGGGGAATATTTTATGTAAATGAGAAATATTAGATGGT
TTACAGTTTATTTTTTACAATAGAAGATAAAAC

Coding sequence (CDS) from alignment at sc0004968:3215..5147-

>TCONS_00044099 ID=TCONS_00044099|Name=TCONS_00044099|organism=Clytia hemisphaerica|type=CDS|length=2082bp|location=Sequence derived from alignment at sc0004968:3215..5147- (Clytia hemisphaerica)
GTGGGTCACCATCTCGACCACATTCACACCATAGTGACGAGTCAACTAAA
GACCTACACCGTACACCTGCTATCGTTCTCAGTACGAACTACTTACCAAA
AGCACCTCAACGTGATGTCTCACCTCGCCCTCAACAACAACAAAAAGCAG
AAGAACCAACGTGTTACATGTATAGGCGTTATTCACCCATGATTAGTGTC
TCAACACAAACAGAGGTGCAATCTAATGGAGATAATATCCAGAAATATCC
AGTAAACTCTCCTCAAAGTAGTAGCAACGGGGAAACTAACGATAACACAT
CTATAAGAGATGAAATTAAAGCTGAAGAAAGCATTGATAATAATATTGAA
AACACACCTGTTGTTGAATCTAACTATCGTAAAAATTGGAAAGTACCAAG
TCCTATTAATACGAAGTTTGAAGAAGAGCATTTTAAATACCATAATGGTA
ACCATCGAGAATCATCACCAAGAGGATCGCCTACAGACCATGGGAATTCA
CTCAGTATAAACAAATTCGGCTGTGTTGAGACTATAGAGTCTCCGTCAGG
GACAGGAACTGTGGTAGTTTACCCTAAAGAGATTGTTTAACGAGAACCGG
AAATGTATCATGAACGTAAAAGACGACATTCCGATCATGAACTTGATGAT
GAAATACACCATCGTTATCGCTACTCTGATCCTAATTTCCCTCGCTCACA
TCATCCAAATCATAGGCCTAACAGAGTCGAGCGACGTAGTAGTACCAGTG
ACTATCCAGTTTTTCATCATAAGAAAGCAAGTCCGACAGCCGACAACCGT
TTGTCACTGTATGAAGAAAATGCACGTAAATTTGCTGAAGAGCGATTGAA
AGTTCTTGATCGTTTTCATTTCGGTCGCGATGCAAGTTTATTCAGACGTC
ATGGCTCGCCCGGGCCGTACGACCGGTACGAAGTGAGTCCTGGTCACGCA
TCTTCGAAACATAAAGACCATCACAGGGACTCTCCTTCACATCAAAGAAG
TTATAAAAATAATAGAATGCCTCATTATGACCATGAGGAAGGTGGGTCAC
CATCTCGACCACATTCACACCATAGTGACGAGTCAACTAAAGACCTACAC
CGTACACCTGCTATCGTTCTCAGTACGAACTACTTACCAAAAGCACCTCA
ACGTGATGTCTCACCTCGCCCTCAACAACAACAAAAAGCAGAAGAACCAA
CGTGTTACATGTATAGGCGTTATTCACCCATGATTAGTGTCTCAACACAA
ACAGAGGTGCAATCTAATGGAGATAATATCCAGAAATATCCAGTAAACTC
TCCTCAAAGTAGTAGCAACGGGGAAACTAACGATAACACATCTATAAGAG
ATGAAATTAAAGCTGAAGAAAGCATTGATAATAATATTGAAAACACACCT
GTTGTTGAATCTAACTATCGTAAAAATTGGAAAGTACCAAGTCCTATTAA
TACGAAGTTTGAAGAAGAGCATTTTAAATACCATAATGGTAACCATCGAG
AATCATCACCAAGAGGATCGCCTACAGACCATGGGAATTCACTCAGTATA
AACAAATTCGGCTGTGTTGAGACTATAGAGTCTCCGTCAGGGACAGGAAC
TGTGGTAGTTTACCCTAAAGAGATTGTTTAACGAGAACCGGAAATGTATC
ATGAACGTAAAAGACGACATTCCGATCATGAACTTGATGATGAAATACAC
CATCGTTATCGCTACTCTGATCCTAATTTCCCTCGCTCACATCATCCAAA
TCATAGGCCTAACAGAGTCGAGCGACGTAGTAGTACCAGTGACTATCCAG
TTTTTCATCATAAGAAAGCAAGTCCGACAGCCGACAACCGTTTGTCACTG
TATGAAGAAAATGCACGTAAATTTGCTGAAGAGCGATTGAAAGTTCTTGA
TCGTTTTCATTTCGGTCGCGATGCAAGTTTATTCAGACGTCATGGCTCGC
CCGGGCCGTACGACCGGTACGAAGTGAGTCCTGGTCACGCATCTTCGAAA
CATAAAGACCATCACAGGGACTCTCCTTCACATCAAAGAAGTTATAAAAA
TAATAGAATGCCTCATTATGACCATGAGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027748XLOC_027748Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044099-proteinTCONS_00044099-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044099-exon-sc0004968-1575043694:4696..5147TCONS_00044099-exon-sc0004968-1575043694:4696..5147Clytia hemisphaericaexon
TCONS_00044099-exon-sc0004968-1575043694:3215..4635TCONS_00044099-exon-sc0004968-1575043694:3215..4635Clytia hemisphaericaexon
TCONS_00044099-exon-sc0004968-1510915933:4696..5147TCONS_00044099-exon-sc0004968-1510915933:4696..5147Clytia hemisphaericaexon
TCONS_00044099-exon-sc0004968-1510915933:3215..4635TCONS_00044099-exon-sc0004968-1510915933:3215..4635Clytia hemisphaericaexon
TCONS_00044099-exon-sc0004968-1491911889:4696..5147TCONS_00044099-exon-sc0004968-1491911889:4696..5147Clytia hemisphaericaexon
TCONS_00044099-exon-sc0004968-1491911889:3215..4635TCONS_00044099-exon-sc0004968-1491911889:3215..4635Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004968supercontigsc0004968:3215..5147 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29685	0.560052	0.0473109	0.122968	2.23548	2.47799	3.67719	5.6456	2.66462	5.5185	3.07943	4.18646	2.91797	1.46652	5.08302	6.01991	7.06502	4.92051	5.13555	6.56212	6.87638	6.53509	3.14748	4.63174	1.6873	1.44097	10.8651	6.86699	5.60898	5.07406
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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