TCONS_00044091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044091
Unique NameTCONS_00044091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044091 ID=TCONS_00044091|Name=TCONS_00044091|organism=Clytia hemisphaerica|type=transcript|length=360bp
CCTTAACGACGATCATGTTCAGGCTTTCTTTTCGAGTTGTtttattttct
cctttcttttccTTAGCTTTGGCTTTATTAGCATTCTTTTGTTCTGTTCT
GCGATTGAAGTCTACAATGAGGTTTTggtctaaaatatttttgctagGCT
CCCAAGTAGCCTGCGACAAGGGATATCCTTGCCACTTCACAAGATAACTC
GTGATTCCAGATCGTTTCTGGATTTCAGAATTCTTTCCACCCTATAAACC
TGGTCTTCCTGTTCGATTTCCACTGTCGGATCGGGGACGTGTGGCATAGA
ATCTAACGGGATGCAATCTAACGGGACGTCACAAAATTCGTCCTCTCCTT
CGACCTCATT
Run BLAST on NCBI

transcript from alignment at sc0004953:3..362

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044091 ID=TCONS_00044091|Name=TCONS_00044091|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at sc0004953:3..362 (Clytia hemisphaerica)
AATGAGGTCGAAGGAGAGGACGAATTTTGTGACGTCCCGTTAGATTGCAT
CCCGTTAGATTCTATGCCACACGTCCCCGATCCGACAGTGGAAATCGAAC
AGGAAGACCAGGTTTATAGGGTGGAAAGAATTCTGAAATCCAGAAACGAT
CTGGAATCACGAGTTATCTTGTGAAGTGGCAAGGATATCCCTTGTCGCAG
GCTACTTGGGAGCctagcaaaaatattttagaccAAAACCTCATTGTAGA
CTTCAATCGCAGAACAGAACAAAAGAATGCTAATAAAGCCAAAGCTAAgg
aaaagaaaggagaaaataaaACAACTCGAAAAGAAAGCCTGAACATGATC
GTCGTTAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027740XLOC_027740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044091-exon-sc0004953-1491911889:3..362TCONS_00044091-exon-sc0004953-1491911889:3..362Clytia hemisphaericaexon
TCONS_00044091-exon-sc0004953-1510915933:3..362TCONS_00044091-exon-sc0004953-1510915933:3..362Clytia hemisphaericaexon
TCONS_00044091-exon-sc0004953-1575043694:3..362TCONS_00044091-exon-sc0004953-1575043694:3..362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004953supercontigsc0004953:3..362 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.380276	0.229115	0.109374	0.00815292	0.438269	0	0.729652	1.43068	0	0	0	0.438171	0.407272	0	0.203645	0.835087	0.529132	0.361562	0	0	0	0.664818	0	0	0.781088	0	0.322166	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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