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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044090 ID=TCONS_00044090|Name=TCONS_00044090|organism=Clytia hemisphaerica|type=transcript|length=1617bp
GGATTCCTTTTACCGTGCCTGTTAGAATCTATTTTACCGGGCACACTGGA
CAAGTCATAACATTAAAACGATTGAGTTACAAATGTTCTGTCTATTAATT
ATTCCAGAATGTATTTTTATTTCCTTTCCTATACAGGTTTACAAAGGTGT
CCGCATCAAACGTCACGATTTGACTTCGTACTACGATGAAGCCGACTACA
TAATACCCCAACAAGTTGACTGCATCAATAACGAAGAGAAAAAGGTGATC
AAAGTTTTGAGTGCAGACACAGATGTTTTCGTTCTTCTATGTGGTCATTT
CTTTGAGAGAAAGTGGTCTTCAAAGATCTACATGGATCCATtcacaaaag
aaaacaaaattattaacATCAACAATTCGGTTAAACGTAGCGGAAATCTT
ACCCAACATCTAATTGCACTCCACGCTCTCTCTGGTTGTGATACAGTCCC
AATGCTGTTCAATATTGGAAAATCAAAAGCAATCAACGCCGCTAAGAATG
TCCCTCTTTTGCATATTGGTGACATCAACTCTCCAATAAAATTGGTAGTC
AAAGAAGGAAAGCAGTTTGTTGCAAAGTGTTATGGCCAAACTCACGAATC
TTCATCTACAAATAGACGTAACATCTGGGTGAGCAAGACTGATGGTTCGA
ATTAGTCAACCAAACCACCCGCACTCAAATATTTGCCACCAACCGACGAA
GCTCTCGAATTGAACATCATGAGAGGGCATTTTGTTGCAATCATGGGGAA
AAATTGTGTCAGTGGCATTCCCCCAGACCTGGATCCTTGTGACTATGGCT
ATGAAAAACGTGAAGATGGAGTGTCGTTGACGCCGACCATGCTTCCAGAC
GGTGTCGATGTTGCTCCAGAAGAGATTCTGCAGATGACCCGCTGCAAATG
TGCATCTTCAAAATGTATTAACAAGAAATGCCCCTGTAAAAAAGCTGAAG
TCGACTGCACTGAATTTTGTAGTTGTAAAGAATGCGAGAACCATAAAGAG
CCTGATTTTAAAATGTTAaacaatgatgaaaatgacgaAGAGCATTTGGA
TAGTAGTGATAACGATGAAGATGACGAGAATGACAATTAATTTTTGTGCT
GTATCATTTACCAGTCAATACTTACTTGAGATTCTGATAGCTCATTGCAT
TATCACATTtggaatttcttcatttttaacacttttttccagtattttcg
aaatatttcaaaatttatatataCGGAAACTTCTAGGATCATTATCATCG
CAATCTacataaaaatatctttcaaacgaGTATAAACTTGACTATGTTTG
gaccattttttgttttgttttcacgattttttgacattttttatgtCATT
CCTTAAAAACCatgtaaaaaattttccccaagaCTTTGGGAGGGCAAGTT
TGGCTTTCCGTAGGGAATTTCCCTTCTGTCCACTATTTCTCTCAGtttga
accacaagtgattttgtgGTTTAGAGATGCTGGCTAAATCGATCTAGCCt
gccagggtgcagtatgcagtgctgacgagtcccaataaggacgaaatgca
tatgctgctctgccacccaaatctcctgagtgaatatagttggacagaaa
ttcttatttcttcacat Run BLAST on NCBI protein sequence of TCONS_00044090-protein >TCONS_00044090-protein ID=TCONS_00044090-protein|Name=TCONS_00044090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MFCLLIIPECIFISFPIQVYKGVRIKRHDLTSYYDEADYIIPQQVDCINN
EEKKVIKVLSADTDVFVLLCGHFFERKWSSKIYMDPFTKENKIININNSV
KRSGNLTQHLIALHALSGCDTVPMLFNIGKSKAINAAKNVPLLHIGDINS
PIKLVVKEGKQFVAKCYGQTHESSSTNRRNIWVSKTDGSN Run BLAST on NCBI transcript from alignment at sc0004952:1276..2892 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044090 ID=TCONS_00044090|Name=TCONS_00044090|organism=Clytia hemisphaerica|type=transcript|length=1617bp|location=Sequence derived from alignment at sc0004952:1276..2892 (Clytia hemisphaerica)
atgtgaagaaataagaatttctgtccaactatattcactcaggagatttg
ggtggcagagcagcatatgcatttcgtccttattgggactcgtcagcact
gcatactgcaccctggcaGGCTAGATCGATTTAGCCAGCATCTCTAAACc
acaaaatcacttgtggttcaaaCTGAGAGAAATAGTGGACAGAAGGGAAA
TTCCCTACGGAAAGCCAAACTTGCCCTCCCAAAGtcttggggaaaatttt
ttacatGGTTTTTAAGGAATGacataaaaaatgtcaaaaaatcgtgaaaa
caaaacaaaaaatggtcCAAACATAGTCAAGTTTATACtcgtttgaaaga
tatttttatgtAGATTGCGATGATAATGATCCTAGAAGTTTCCGtatata
taaattttgaaatatttcgaaaatactggaaaaaagtgttaaaaatgaag
aaattccaAATGTGATAATGCAATGAGCTATCAGAATCTCAAGTAAGTAT
TGACTGGTAAATGATACAGCACAAAAATTAATTGTCATTCTCGTCATCTT
CATCGTTATCACTACTATCCAAATGCTCTtcgtcattttcatcattgttT
AACATTTTAAAATCAGGCTCTTTATGGTTCTCGCATTCTTTACAACTACA
AAATTCAGTGCAGTCGACTTCAGCTTTTTTACAGGGGCATTTCTTGTTAA
TACATTTTGAAGATGCACATTTGCAGCGGGTCATCTGCAGAATCTCTTCT
GGAGCAACATCGACACCGTCTGGAAGCATGGTCGGCGTCAACGACACTCC
ATCTTCACGTTTTTCATAGCCATAGTCACAAGGATCCAGGTCTGGGGGAA
TGCCACTGACACAATTTTTCCCCATGATTGCAACAAAATGCCCTCTCATG
ATGTTCAATTCGAGAGCTTCGTCGGTTGGTGGCAAATATTTGAGTGCGGG
TGGTTTGGTTGACTAATTCGAACCATCAGTCTTGCTCACCCAGATGTTAC
GTCTATTTGTAGATGAAGATTCGTGAGTTTGGCCATAACACTTTGCAACA
AACTGCTTTCCTTCTTTGACTACCAATTTTATTGGAGAGTTGATGTCACC
AATATGCAAAAGAGGGACATTCTTAGCGGCGTTGATTGCTTTTGATTTTC
CAATATTGAACAGCATTGGGACTGTATCACAACCAGAGAGAGCGTGGAGT
GCAATTAGATGTTGGGTAAGATTTCCGCTACGTTTAACCGAATTGTTGAT
gttaataattttgttttcttttgtgaATGGATCCATGTAGATCTTTGAAG
ACCACTTTCTCTCAAAGAAATGACCACATAGAAGAACGAAAACATCTGTG
TCTGCACTCAAAACTTTGATCACCTTTTTCTCTTCGTTATTGATGCAGTC
AACTTGTTGGGGTATTATGTAGTCGGCTTCATCGTAGTACGAAGTCAAAT
CGTGACGTTTGATGCGGACACCTTTGTAAACCTGTATAGGAAAGGAAATA
AAAATACATTCTGGAATAATTAATAGACAGAACATTTGTAACTCAATCGT
TTTAATGTTATGACTTGTCCAGTGTGCCCGGTAAAATAGATTCTAACAGG
CACGGTAAAAGGAATCC Coding sequence (CDS) from alignment at sc0004952:1276..2892 >TCONS_00044090 ID=TCONS_00044090|Name=TCONS_00044090|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0004952:1276..2892 (Clytia hemisphaerica)
CTAATTCGAACCATCAGTCTTGCTCACCCAGATGTTACGTCTATTTGTAG
ATGAAGATTCGTGAGTTTGGCCATAACACTTTGCAACAAACTGCTTTCCT
TCTTTGACTACCAATTTTATTGGAGAGTTGATGTCACCAATATGCAAAAG
AGGGACATTCTTAGCGGCGTTGATTGCTTTTGATTTTCCAATATTGAACA
GCATTGGGACTGTATCACAACCAGAGAGAGCGTGGAGTGCAATTAGATGT
TGGGTAAGATTTCCGCTACGTTTAACCGAATTGTTGATgttaataatttt
gttttcttttgtgaATGGATCCATGTAGATCTTTGAAGACCACTTTCTCT
CAAAGAAATGACCACATAGAAGAACGAAAACATCTGTGTCTGCACTCAAA
ACTTTGATCACCTTTTTCTCTTCGTTATTGATGCAGTCAACTTGTTGGGG
TATTATGTAGTCGGCTTCATCGTAGTACGAAGTCAAATCGTGACGTTTGA
TGCGGACACCTTTGTAAACCTGTATAGGAAAGGAAATAAAAATACATTCT
GGAATAATTAATAGACAGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044090-exon-sc0004952-1491911889:1276..2892 | TCONS_00044090-exon-sc0004952-1491911889:1276..2892 | Clytia hemisphaerica | exon |
| TCONS_00044090-exon-sc0004952-1510915933:1276..2892 | TCONS_00044090-exon-sc0004952-1510915933:1276..2892 | Clytia hemisphaerica | exon |
| TCONS_00044090-exon-sc0004952-1575043694:1276..2892 | TCONS_00044090-exon-sc0004952-1575043694:1276..2892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004952 | supercontig | sc0004952:1276..2892 . |
Blast
The following BLAST results are available for this feature:
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