TCONS_00044089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044089
Unique NameTCONS_00044089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044089 ID=TCONS_00044089|Name=TCONS_00044089|organism=Clytia hemisphaerica|type=transcript|length=1717bp
CGACTTTGGAGGGTATAATACAAAGCAGATGAGAGAAAATGGAGTATCAA
AAAAGAACATGACAGCAGTGAATTACAAACCATTAATCAACAAGACACCA
TCAGATCCATCCACGATTCTAACAGCCATGTGTGATGTCGAAAGTGTTTC
CAACAAAGCAGGTCAGAAGGAAACTGTGCTCACCTGTGATCAGCAGCTGT
ATAGGGTCACAATGGACATCANAACAAGATACCATCAGATCCATCCACGA
TTCTAACAGCCATGTGTGATGTCGAAAGTGTTTCCAACAAAGCAGGTCAG
AAGGAAACTGTGCTCACCTGTGATCAGCAGCTGTATAGGGTCACAATGGA
CATCATCTGGAATGACCCGGCAAGATGGGCAAATTTCTACCCAAGAATTG
GTGGGATGCACTGGCTCATGAGCTTCGTTGGGTCGGTTGGAAAACTCATG
AAGAATAGTGGACTTGACAAGCTACTGAAATCAGGTTTTGCAGGCGTTGA
AAAGATGTTGACCGGCAAAAAATATCCCATGAATGTACGAGCACTCCGGA
TTGTTGCTTTTGAGCTCCTAAAGCATTTAGTCGACGAAAGTACTACCCGA
GAAGACCTAGTCAAGTCCTTAGATGATCTATCAAAAAACAACAAGCTGGC
ACAACATTGGATAACGAATCTCATTGATCCAGTGTTCCTCATGATGAAAT
ACCTACGTGCAGAGAGAGAAGGAGAATTTGGATTGCATTTGTACTGCTGT
CAAAAGATGATCCCGTACTTCTTTGCTGCTGGCCATCTGAACTATGCGCG
TGATGGAATCGTCTACCTCAGATCAATGCACAGGATGCCAAGCGATCTAC
TGAAACAGTTTATGAAGGGAGAGCATATCGTAAGACTCAAAGACGGAAGA
TTCAATGGTATATGGAGTGATATGGCAATCGAATCAACCTACATGAAAGT
AGGAAAAGgACCAACTGGGATGATTGGTGTCACCACAAGTGAAAGGACAG
TGGCAATCTGGGCAAATAGTCATCATATCTGTGGAGAGCTCTTGACAGAG
CTTGGTGAGCAAAGGGATAAAAGGCAACCAGACAATAACAAACACAAGGA
AGAAGGAAATGGAAGAATCAAATCAGATAACAACGATCGTATGAAAATCA
GAAAAGCTCTAGAGAAATGCATCCACCCACTTCAAATTCACACCCATGCC
TCTAATACACTCGTCAACATCTACAGTGGAGAAGAATCTGACTCTTCTGT
AAATGTCAATTAGGCTCGCGAGACTGGTGAGAAGTAGATGATCACCTTCG
AAAATGATCTTCCGGATTCGTTTAGAGCCACTATCAGCTCAAAGGTGATA
CTCATGCAATCTGTGAACGACAAACGgtcaaagaaaaagaatgaaaaaaa
tggaTACAACACAGACGTCATTTTCTCCCGTGTTCTTTATCTTCTTGGAA
CAAATCAAATGGAATTCGAAGACATCTTCAATTACGAGCTCGCTTCTATT
CCAACTGCACTATTCAAGGAATCTGGAGAGCCCAGGTACCCAAATTGCAA
ATCGGTCTTAATGAAAAATCTTAGGTGCCAGGAGAGTTCTCGTGGAATCA
AACCTGAGGCAGTAGTTGTTGATGGAGGAGGAATGCTGCACAACATTTAT
TGGCCCTCGACTGGTACTGTAAAGGATTTGGTTGACAATGTCGAGCATTA
TCTCCAAAAAGCATCAC
Run BLAST on NCBI

protein sequence of TCONS_00044089-protein

>TCONS_00044089-protein ID=TCONS_00044089-protein|Name=TCONS_00044089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MCDVESVSNKAGQKETVLTCDQQLYRVTMDIIWNDPARWANFYPRIGGMH
WLMSFVGSVGKLMKNSGLDKLLKSGFAGVEKMLTGKKYPMNVRALRIVAF
ELLKHLVDESTTREDLVKSLDDLSKNNKLAQHWITNLIDPVFLMMKYLRA
EREGEFGLHLYCCQKMIPYFFAAGHLNYARDGIVYLRSMHRMPSDLLKQF
MKGEHIVRLKDGRFNGIWSDMAIESTYMKVGKGPTGMIGVTTSERTVAIW
ANSHHICGELLTELGEQRDKRQPDNNKHKEEGNGRIKSDNNDRMKIRKAL
EKCIHPLQIHTHASNTLVNIYSGEESDSSVNVN
Run BLAST on NCBI

transcript from alignment at sc0004952:3248..5145-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044089 ID=TCONS_00044089|Name=TCONS_00044089|organism=Clytia hemisphaerica|type=transcript|length=1898bp|location=Sequence derived from alignment at sc0004952:3248..5145- (Clytia hemisphaerica)
CGACTTTGGAGGGTATAATACAAAGCAGATGAGAGAAAATGGAGTATCAA
AAAAGAACATGACAGCAGTGAATTACAAACCATTAATCAACAAGACACCA
TCAGATCCATCCACGATTCTAACAGCCATGTGTGATGTCGAAAGTGTTTC
CAACAAAGCAGGTCAGAAGGAAACTGTGCTCACCTGTGATCAGCAGCTGT
ATAGGGTCACAATGGACATCANAACAAGATACCATCAGATCCATCCACGA
TTCTAACAGCCATGTGTGATGTCGAAAGTGTTTCCAACAAAGCAGGTCAG
AAGGAAACTGTGCTCACCTGTGATCAGCAGCTGTATAGGGTCACAATGGA
CATCATCTGGAATGACCCGGCAAGATGGGCAAATTTCTACCCAAGAATTG
GTGGGATGCACTGGCTCATGAGCTTCGTTGGGTCGGTTGGAAAACTCATG
AAGAATAGTGGACTTGACAAGCTACTGAAATCAGGTTTTGCAGGCGTTGA
AAAGATGTTGACCGGCAAAAAATATCCCATGAATGTACGAGCACTCCGGA
TTGTTGCTTTTGAGCTCCTAAAGCATTTAGTCGACGAAAGTACTACCCGA
GAAGACCTAGTCAAGTCCTTAGATGATCTATCAAAAAACAACAAGCTGGC
ACAACATTGGATAACGAATCTCATTGATCCAGTGTTCCTCATGATGAAAT
ACCTACGTGCAGAGAGAGAAGGAGAATTTGGATTGCATTTGTACTGCTGT
CAAAAGATGATCCCGTACTTCTTTGCTGCTGGCCATCTGAACTATGCGCG
TGATGGAATCGTCTACCTCAGATCAATGCACAGGATGCCAAGCGATCTAC
TGAAACAGTTTATGAAGGGAGAGCATATCGTAAGACTCAAAGACGGAAGA
TTCAATGGTATATGGAGTGATATGGCAATCGAATCAACCTACATGAAAGT
AGGAAAAGGTAAATACATTTTTATCTCAAACATCATAAACTACACGAATC
TGATCTGGTACTGTTTAGTTAGTATCTCAAATTCTTGTTATCATATTTTC
AAATGTTGCTGATTCAGGCTAGGCTGGTCAAACTACTTATCCTTGATAAA
TTTAACATTTGTAAATTTTACCTTCTTTATTTTCATCAGGACCAACTGGG
ATGATTGGTGTCACCACAAGTGAAAGGACAGTGGCAATCTGGGCAAATAG
TCATCATATCTGTGGAGAGCTCTTGACAGAGCTTGGTGAGCAAAGGGATA
AAAGGCAACCAGACAATAACAAACACAAGGAAGAAGGAAATGGAAGAATC
AAATCAGATAACAACGATCGTATGAAAATCAGAAAAGCTCTAGAGAAATG
CATCCACCCACTTCAAATTCACACCCATGCCTCTAATACACTCGTCAACA
TCTACAGTGGAGAAGAATCTGACTCTTCTGTAAATGTCAATTAGGCTCGC
GAGACTGGTGAGAAGTAGATGATCACCTTCGAAAATGATCTTCCGGATTC
GTTTAGAGCCACTATCAGCTCAAAGGTGATACTCATGCAATCTGTGAACG
ACAAACGGTCAAAGAAAAAGAATGAAAAAAATGGATACAACACAGACGTC
ATTTTCTCCCGTGTTCTTTATCTTCTTGGAACAAATCAAATGGAATTCGA
AGACATCTTCAATTACGAGCTCGCTTCTATTCCAACTGCACTATTCAAGG
AATCTGGAGAGCCCAGGTACCCAAATTGCAAATCGGTCTTAATGAAAAAT
CTTAGGTGCCAGGAGAGTTCTCGTGGAATCAAACCTGAGGCAGTAGTTGT
TGATGGAGGAGGAATGCTGCACAACATTTATTGGCCCTCGACTGGTACTG
TAAAGGATTTGGTTGACAATGTCGAGCATTATCTCCAAAAAGCATCAC

Coding sequence (CDS) from alignment at sc0004952:3248..5145-

>TCONS_00044089 ID=TCONS_00044089|Name=TCONS_00044089|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at sc0004952:3248..5145- (Clytia hemisphaerica)
GACCAACTGGGATGATTGGTGTCACCACAAGTGAAAGGACAGTGGCAATC
TGGGCAAATAGTCATCATATCTGTGGAGAGCTCTTGACAGAGCTTGGTGA
GCAAAGGGATAAAAGGCAACCAGACAATAACAAACACAAGGAAGAAGGAA
ATGGAAGAATCAAATCAGATAACAACGATCGTATGAAAATCAGAAAAGCT
CTAGAGAAATGCATCCACCCACTTCAAATTCACACCCATGCCTCTAATAC
ACTCGTCAACATCTACAGTGGAGAAGAATCTGACTCTTCTGTAAATGTCA
ATTAGATGTGTGATGTCGAAAGTGTTTCCAACAAAGCAGGTCAGAAGGAA
ACTGTGCTCACCTGTGATCAGCAGCTGTATAGGGTCACAATGGACATCAT
CTGGAATGACCCGGCAAGATGGGCAAATTTCTACCCAAGAATTGGTGGGA
TGCACTGGCTCATGAGCTTCGTTGGGTCGGTTGGAAAACTCATGAAGAAT
AGTGGACTTGACAAGCTACTGAAATCAGGTTTTGCAGGCGTTGAAAAGAT
GTTGACCGGCAAAAAATATCCCATGAATGTACGAGCACTCCGGATTGTTG
CTTTTGAGCTCCTAAAGCATTTAGTCGACGAAAGTACTACCCGAGAAGAC
CTAGTCAAGTCCTTAGATGATCTATCAAAAAACAACAAGCTGGCACAACA
TTGGATAACGAATCTCATTGATCCAGTGTTCCTCATGATGAAATACCTAC
GTGCAGAGAGAGAAGGAGAATTTGGATTGCATTTGTACTGCTGTCAAAAG
ATGATCCCGTACTTCTTTGCTGCTGGCCATCTGAACTATGCGCGTGATGG
AATCGTCTACCTCAGATCAATGCACAGGATGCCAAGCGATCTACTGAAAC
AGTTTATGAAGGGAGAGCATATCGTAAGACTCAAAGACGGAAGATTCAAT
GGTATATGGAGTGATATGGCAATCGAATCAACCTACATGAAAGTAGGAAA
AGGACCAACTGGGATGATTGGTGTCACCACAAGTGAAAGGACAGTGGCAA
TCTGGGCAAATAGTCATCATATCTGTGGAGAGCTCTTGACAGAGCTTGGT
GAGCAAAGGGATAAAAGGCAACCAGACAATAACAAACACAAGGAAGAAGG
AAATGGAAGAATCAAATCAGATAACAACGATCGTATGAAAATCAGAAAAG
CTCTAGAGAAATGCATCCACCCACTTCAAATTCACACCCATGCCTCTAAT
ACACTCGTCAACATCTACAGTGGAGAAGAATCTGACTCTTCTGTAAATGT
CAATTAGATGTGTGATGTCGAAAGTGTTTCCAACAAAGCAGGTCAGAAGG
AAACTGTGCTCACCTGTGATCAGCAGCTGTATAGGGTCACAATGGACATC
ATCTGGAATGACCCGGCAAGATGGGCAAATTTCTACCCAAGAATTGGTGG
GATGCACTGGCTCATGAGCTTCGTTGGGTCGGTTGGAAAACTCATGAAGA
ATAGTGGACTTGACAAGCTACTGAAATCAGGTTTTGCAGGCGTTGAAAAG
ATGTTGACCGGCAAAAAATATCCCATGAATGTACGAGCACTCCGGATTGT
TGCTTTTGAGCTCCTAAAGCATTTAGTCGACGAAAGTACTACCCGAGAAG
ACCTAGTCAAGTCCTTAGATGATCTATCAAAAAACAACAAGCTGGCACAA
CATTGGATAACGAATCTCATTGATCCAGTGTTCCTCATGATGAAATACCT
ACGTGCAGAGAGAGAAGGAGAATTTGGATTGCATTTGTACTGCTGTCAAA
AGATGATCCCGTACTTCTTTGCTGCTGGCCATCTGAACTATGCGCGTGAT
GGAATCGTCTACCTCAGATCAATGCACAGGATGCCAAGCGATCTACTGAA
ACAGTTTATGAAGGGAGAGCATATCGTAAGACTCAAAGACGGAAGATTCA
ATGGTATATGGAGTGATATGGCAATCGAATCAACCTACATGAAAGTAGGA
AAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027738XLOC_027738Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044089-proteinTCONS_00044089-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044089-exon-sc0004952-1575043694:4188..5145TCONS_00044089-exon-sc0004952-1575043694:4188..5145Clytia hemisphaericaexon
TCONS_00044089-exon-sc0004952-1575043694:3248..4006TCONS_00044089-exon-sc0004952-1575043694:3248..4006Clytia hemisphaericaexon
TCONS_00044089-exon-sc0004952-1510915933:4188..5145TCONS_00044089-exon-sc0004952-1510915933:4188..5145Clytia hemisphaericaexon
TCONS_00044089-exon-sc0004952-1510915933:3248..4006TCONS_00044089-exon-sc0004952-1510915933:3248..4006Clytia hemisphaericaexon
TCONS_00044089-exon-sc0004952-1491911889:4188..5145TCONS_00044089-exon-sc0004952-1491911889:4188..5145Clytia hemisphaericaexon
TCONS_00044089-exon-sc0004952-1491911889:3248..4006TCONS_00044089-exon-sc0004952-1491911889:3248..4006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004952supercontigsc0004952:3248..5145 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.338478	0.192106	0.635342	0.502505	0.126906	0.275779	0.362962	0.424751	0.277553	0.270124	0.486643	0.360374	0.290632	0.386624	0.325604	0.702479	0.176611	0.283101	0.200072	0.366382	0.0895509	0.13314	0.144477	0.245241	0.783035	1.1907	0.354852	0.103284	0.466123	0.23944
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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