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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044088 ID=TCONS_00044088|Name=TCONS_00044088|organism=Clytia hemisphaerica|type=transcript|length=1540bp
AGGTATGAATTTTGTTGAGCTACAGAAACAGGTGGAAAGAGACCTTAACC
GCGAAAACGAAAATGACACGATAAGTTCAAGAAACAAGGACCCAGCAGGG
TCAATGTACCATGAAGCGGTAAACGGGGAATACCGTACAACAACTTTCAT
TCTCACCATGTCTTTCAAAAGCTTAAAGCTACCTTAGTCAGTTTTAATAT
CAATCGCTTTCATATATTATTTCACTTTTAGAATTCGAAgaaatcaactc
aaaattaAAGTCCCGTCTCTCACTTATTGAAGGCCAACGTGAGCTCAAGG
CATCAATCTTCACATGGGCAAGACATATATTGATGCAGAATCTAAAACGT
CAAAACGATGTAGGTTCTATGTCGAAACCAGAAATCATTTCCAATCTACA
TATGATTTTAAGTGGCAACCCAGGAACCGGAAAAACAATGGTTGCCAGAT
GTATGGCTGGAATCTTGTATGATATTGGTTTGTTAGAATCACCGGACATC
GTTGAAGTCCAAAAGGAAGAGATTGTCTCGGGTTTTGTCTCGAGCACGTC
AAACAAGTGTCTCGAAGTGATCAAGTCCGCGTATGGGAAGGTGATGTTTA
TTGACGAGGCTTACCAACTATGCCCTAAGAAGTCAATGCAAAATCATGGT
GCAGAGGCTCTGGAAACTATTATGAGGTATATGCATCCCTCAANCTTTTT
CAGGTTTTCTTGGTTTAAGTGAGTTGGGTCTTTTCACTGGGTTTTGCCTT
GTTTTATTTTCACTCGGATCGGCTCGATAGCGGAAACGGTCTTCCAGAGG
AAGCCAactttttaggtagtttttaaagaaaattttcttgtattttattt
ttagatctTAACTGATTTTTTTAACATGTTTATATTAATGTATATAGATA
GAAAAAAGACATTGTCAAGCAAGtttctatatatatatatcatgGTCGCG
TCCATCAGGGTCATCCATATAGTacataaacaaaaattttcgaaaatttg
gcaCCCCTTCCTCTTGTACGCAAAGAACAATAGCAATGACTTCATTCATA
CGATAGATgaacgcttttgctaaacccctcCCCCTTTCACTCCGTGCGTA
CCATACGGATGGCCCCATCCCGGTCCTCATTATAATACCTTGAGGGGTTT
AATTTTTTTCGCGAATCGGCCTCTTTTTGAAccaattttgttcattttcc
taggggttttggcaAATAACTAGTGTTTTCGGCAAAAGTCCAGGTTTTAA
GATTTTCGCGAATTAATGGATAAACTCGCGATACTCGCGAAACTCGGAAA
ATTTATCCTCTTGAGGTATTCAATGATTTATTAGCTTGTACATAATTGTA
AAGATTTCaagagtttttatttttcagctttaCGTACATAATATATATTC
TTATATGTTAGTTTTGGAATAGGTAAAGACTTATGTAATTAATTCTGTGT
CCAAATTATTTTGCGTCATAATCCTATTTGTTTCTTCAAGTTGGGAATGG
GTACTACCGGATAAATGCTCATAAAATGTTTCCCcaaaga Run BLAST on NCBI protein sequence of TCONS_00044088-protein >TCONS_00044088-protein ID=TCONS_00044088-protein|Name=TCONS_00044088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MQNLKRQNDVGSMSKPEIISNLHMILSGNPGTGKTMVARCMAGILYDIGL
LESPDIVEVQKEEIVSGFVSSTSNKCLEVIKSAYGKVMFIDEAYQLCPKK
SMQNHGAEALETIMRYMHPSXFFRFSWFK Run BLAST on NCBI transcript from alignment at sc0004945:8..1803+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044088 ID=TCONS_00044088|Name=TCONS_00044088|organism=Clytia hemisphaerica|type=transcript|length=1796bp|location=Sequence derived from alignment at sc0004945:8..1803+ (Clytia hemisphaerica)
AGGTATGAATTTTGTTGAGCTACAGAAACAGGTGGAAAGAGACCTTAACC
GCGAAAACGAAAATGACACGATAAGTTCAAGAAACAAGGACCCAGCAGGG
TCAATGTACCATGAAGCGGTAAACGGGGAATACCGTACAACAACTTTCAT
TCTCACCATGTCTTTCAAAAGCTTAAAGCTACCTTAGTCAGTTTTAATAT
CAATCGCTTTCATATATTATTTCACTTTTAGAATTCGAAgaaatcaactc
aaaattaAAGTCCCGTCTCTCACTTATTGAAGGCCAACGTGAGCTCAAGG
CATCAATCTTCACATGGGCAAGACATATATTGATGCAGAATCTAAAACGT
CAAAACGATGTAGGTTCTATGTCGAAACCAGAAATCATTTCCAATCTACA
TATGATTTTAAGTGGCAACCCAGGAACCGGAAAAACAATGGTTGCCAGAT
GTATGGCTGGTAAGTTAAACTTTATCAGAACTATATGACTCAAAACTTAT
ACTCTCCTTCATATTTCCCTAATTTTTTCTGAGAAATATAGATAAAGTTA
GGAAGGGAAGAATCCTCAAAATTACTTATTTTTCCTATATTTTGGTGAAT
AATACGATGATTAGATTGTTGCATCTCTTTTAGATCCAAATTGATTCCTG
AAACAGTTAGTTTAGAAAGTATACTTTTGTCCAGCcgtttaaaatttatt
atttgttTATATCAGGAATCTTGTATGATATTGGTTTGTTAGAATCACCG
GACATCGTTGAAGTCCAAAAGGAAGAGATTGTCTCGGGTTTTGTCTCGAG
CACGTCAAACAAGTGTCTCGAAGTGATCAAGTCCGCGTATGGGAAGGTGA
TGTTTATTGACGAGGCTTACCAACTATGCCCTAAGAAGTCAATGCAAAAT
CATGGTGCAGAGGCTCTGGAAACTATTATGAGGTATATGCATCCCTCAAN
CTTTTTCAGGTTTTCTTGGTTTAAGTGAGTTGGGTCTTTTCACTGGGTTT
TGCCTTGTTTTATTTTCACTCGGATCGGCTCGATAGCGGAAACGGTCTTC
CAGAGGAAGCCAactttttaggtagtttttaaagaaaattttcttgtatt
ttatttttagatctTAACTGATTTTTTTAACATGTTTATATTAATGTATA
TAGATAGAAAAAAGACATTGTCAAGCAAGtttctatatatatatatcatg
GTCGCGTCCATCAGGGTCATCCATATAGTacataaacaaaaattttcgaa
aatttggcaCCCCTTCCTCTTGTACGCAAAGAACAATAGCAATGACTTCA
TTCATACGATAGATgaacgcttttgctaaacccctcCCCCTTTCACTCCG
TGCGTACCATACGGATGGCCCCATCCCGGTCCTCATTATAATACCTTGAG
GGGTTTAATTTTTTTCGCGAATCGGCCTCTTTTTGAAccaattttgttca
ttttcctaggggttttggcaAATAACTAGTGTTTTCGGCAAAAGTCCAGG
TTTTAAGATTTTCGCGAATTAATGGATAAACTCGCGATACTCGCGAAACT
CGGAAAATTTATCCTCTTGAGGTATTCAATGATTTATTAGCTTGTACATA
ATTGTAAAGATTTCaagagtttttatttttcagctttaCGTACATAATAT
ATATTCTTATATGTTAGTTTTGGAATAGGTAAAGACTTATGTAATTAATT
CTGTGTCCAAATTATTTTGCGTCATAATCCTATTTGTTTCTTCAAGTTGG
GAATGGGTACTACCGGATAAATGCTCATAAAATGTTTCCCcaaaga Coding sequence (CDS) from alignment at sc0004945:8..1803+ >TCONS_00044088 ID=TCONS_00044088|Name=TCONS_00044088|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0004945:8..1803+ (Clytia hemisphaerica)
ATGCAGAATCTAAAACGTCAAAACGATGTAGGTTCTATGTCGAAACCAGA
AATCATTTCCAATCTACATATGATTTTAAGTGGCAACCCAGGAACCGGAA
AAACAATGGTTGCCAGATGTATGGCTGGAATCTTGTATGATATTGGTTTG
TTAGAATCACCGGACATCGTTGAAGTCCAAAAGGAAGAGATTGTCTCGGG
TTTTGTCTCGAGCACGTCAAACAAGTGTCTCGAAGTGATCAAGTCCGCGT
ATGGGAAGGTGATGTTTATTGACGAGGCTTACCAACTATGCCCTAAGAAG
TCAATGCAAAATCATGGTGCAGAGGCTCTGGAAACTATTATGAGGTATAT
GCATCCCTCAANCTTTTTCAGGTTTTCTTGGTTTAAGTGAATGCAGAATC
TAAAACGTCAAAACGATGTAGGTTCTATGTCGAAACCAGAAATCATTTCC
AATCTACATATGATTTTAAGTGGCAACCCAGGAACCGGAAAAACAATGGT
TGCCAGATGTATGGCTGGAATCTTGTATGATATTGGTTTGTTAGAATCAC
CGGACATCGTTGAAGTCCAAAAGGAAGAGATTGTCTCGGGTTTTGTCTCG
AGCACGTCAAACAAGTGTCTCGAAGTGATCAAGTCCGCGTATGGGAAGGT
GATGTTTATTGACGAGGCTTACCAACTATGCCCTAAGAAGTCAATGCAAA
ATCATGGTGCAGAGGCTCTGGAAACTATTATGAGGTATATGCATCCCTCA
ANCTTTTTCAGGTTTTCTTGGTTTAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044088-exon-sc0004945-1491911889:8..466 | TCONS_00044088-exon-sc0004945-1491911889:8..466 | Clytia hemisphaerica | exon |
| TCONS_00044088-exon-sc0004945-1510915933:8..466 | TCONS_00044088-exon-sc0004945-1510915933:8..466 | Clytia hemisphaerica | exon |
| TCONS_00044088-exon-sc0004945-1575043694:8..466 | TCONS_00044088-exon-sc0004945-1575043694:8..466 | Clytia hemisphaerica | exon |
| TCONS_00044088-exon-sc0004945-1491911889:723..1803 | TCONS_00044088-exon-sc0004945-1491911889:723..1803 | Clytia hemisphaerica | exon |
| TCONS_00044088-exon-sc0004945-1510915933:723..1803 | TCONS_00044088-exon-sc0004945-1510915933:723..1803 | Clytia hemisphaerica | exon |
| TCONS_00044088-exon-sc0004945-1575043694:723..1803 | TCONS_00044088-exon-sc0004945-1575043694:723..1803 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004945 | supercontig | sc0004945:8..1803 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
The following BLAST results are available for this feature:
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