Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044086 ID=TCONS_00044086|Name=TCONS_00044086|organism=Clytia hemisphaerica|type=transcript|length=761bpRun BLAST on NCBI transcript from alignment at sc0004937:1..2116- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00044086 ID=TCONS_00044086|Name=TCONS_00044086|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at sc0004937:1..2116- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00044086 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3) HSP 1 Score: 154.451 bits (389), Expect = 2.452e-42 Identity = 68/122 (55.74%), Postives = 87/122 (71.31%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 GEKP+ C VCG RF +L H R+HTG KP+KCE CGK FS N++ H+ HTGEKPFKC+ C+ RF+ L+ H R+HTG P++C+ CGK+FSQ++NL H IHTGEKPF C+EC Sbjct: 539 GEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEEC 660 HSP 2 Score: 147.902 bits (372), Expect = 5.389e-40 Identity = 66/122 (54.10%), Postives = 84/122 (68.85%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 GEKPF CNVCG F+Q +AH R+HTG KP+KCEVCGK F+ N+ H+R HTGEKP+KCE C F+ +L+ H +HTG PF+C+ C K FSQ ++L H R+HTGEKP+ C C Sbjct: 511 GEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTC 632 HSP 3 Score: 147.132 bits (370), Expect = 1.020e-39 Identity = 66/122 (54.10%), Postives = 81/122 (66.39%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 GEKP+ C CG F+ S ++H R+HTG KPF+C VCGK FS + H+R HTGEKP+KCEVC RF +L H R+HTG P++CE CGK FSQ +NL H +HTGEKPF C C Sbjct: 483 GEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDAC 604 HSP 4 Score: 145.976 bits (367), Expect = 2.759e-39 Identity = 63/122 (51.64%), Postives = 83/122 (68.03%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 GEKPF C+ C RF+Q L+AH R+HTG KP+KC+ CGK+FS + N++ H+ HTGEKPFKCE C F+ L H R+HTG P+ C+ CGK FSQ ++ H R+HTGE+P+ C C Sbjct: 595 GEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVC 716 HSP 5 Score: 144.436 bits (363), Expect = 7.907e-39 Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 GEKP+ C CG F+Q +L+AH +HTG KPFKC+ C K FS +++ H+R HTGEKP+KC+ C F+ + +L+ H IHTG PF+CE CGK FS A L+ H R+HTGEKP+ CQ+C Sbjct: 567 GEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQC 688 HSP 6 Score: 142.895 bits (359), Expect = 2.730e-38 Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = 1 Query: 4 EKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 EKP+ C+ CG F+ +L +H R+HTG KP+KCE CGK FSS + + H+R HTGEKPF+C VC F+ + H R+HTG P++CEVCGK F+ NL NH R+HTGEKP+ C+EC Sbjct: 456 EKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEEC 576 HSP 7 Score: 140.198 bits (352), Expect = 3.039e-37 Identity = 65/122 (53.28%), Postives = 83/122 (68.03%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 GEKP+ C VCG FTQ+ L+AH RIHTG KP+KC CGK FS N+ H+R HT EKP+KC+ C F++ +L H R+HTG P++CE CGK FS ++ +H R+HTGEKPF C C Sbjct: 399 GEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVC 520 HSP 8 Score: 139.813 bits (351), Expect = 3.288e-37 Identity = 62/122 (50.82%), Postives = 85/122 (69.67%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 GEKP+ C+ CG F++ L H R+HTG KP+KCEVCGK F+ + +++ H+R HTGEKP+KC C RF+ +L H R+HT P++C+ CGK FS NL +H R+HTGEKP+ C+EC Sbjct: 371 GEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEEC 492 HSP 9 Score: 138.272 bits (347), Expect = 1.278e-36 Identity = 65/122 (53.28%), Postives = 81/122 (66.39%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 GEKP+ C+ CG F Q L AH+ IHTG KP++C+ CGK FS ++ H R HTGEKP+KCEVC FT + L+ H RIHTG P++C CGK FS +NL H R+HT EKP+ C EC Sbjct: 343 GEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDEC 464 HSP 10 Score: 137.502 bits (345), Expect = 2.695e-36 Identity = 63/122 (51.64%), Postives = 79/122 (64.75%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 GEKP+ C CG RF+ +L H R+HT KP+KC+ CGK FS N+ H+R HTGEKP+KCE C F+ S + H R+HTG PF C VCGK FSQ + H R+HTGEKP+ C+ C Sbjct: 427 GEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVC 548 HSP 11 Score: 130.183 bits (326), Expect = 9.744e-34 Identity = 58/122 (47.54%), Postives = 82/122 (67.21%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 G+K + C+ CG F+Q +L+ H R+HTG KP+ C CGKSF+ ++ H HTGEKP++C+ C F+ L H R+HTG P++CEVCGK F+Q+++L H RIHTGEKP+ C +C Sbjct: 315 GKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDC 436 HSP 12 Score: 124.405 bits (311), Expect = 8.878e-32 Identity = 56/113 (49.56%), Postives = 74/113 (65.49%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTG 339 GEKP+ C+ CG F+Q+ +L+ H IHTG KPFKCE CGK FS + H+R HTGEKP+ C+ C F+ H R+HTG P+ C+VC K FSQ+++L H R+HTG Sbjct: 623 GEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTG 735 HSP 13 Score: 102.834 bits (255), Expect = 2.712e-24 Identity = 54/150 (36.00%), Postives = 72/150 (48.00%), Query Frame = 1 Query: 1 GEKPFMCNVCGNRFTQKGSLKAHMRIH----------------------------TGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 G+K + N C F SL+ H ++H TG K + C CGK FS N++ H+R HTGEKP+ C C F L H+ IHTG P+ C+ CGK FS+ +L H R+HTGEKP+ C+ C Sbjct: 259 GQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVC 408 HSP 14 Score: 77.0258 bits (188), Expect = 7.215e-16 Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 1 Query: 28 CGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366 CG + T K S IHTG K ++ C ++F+ ++E HK+ H G+K C E + + + TG + C CGK FSQ +NL H R+HTGEKP+ C EC Sbjct: 241 CG-KDTLKVSPLTQRSIHTGQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHEC 352 The following BLAST results are available for this feature:
BLAST of TCONS_00044086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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