TCONS_00044086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044086
Unique NameTCONS_00044086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044086 ID=TCONS_00044086|Name=TCONS_00044086|organism=Clytia hemisphaerica|type=transcript|length=761bp
GGCGAGAAACCTTTTATGTGTAATGTATGTGGTAACAGATTTACACAAAA
AGGTTCTCTTAAAGCTCACATGCGAATCCATACTGGTGTTAAGCCATTCA
AATGTGAGGTTTGTGGTAAATCATTTTCTAGCAAGAGAAATGTTGAACGG
CACAAAAGAACTCATACTGGTGAAAAACCTTTTAAATGTGAAGTATGCGA
GAATAGATTTACAATAAAAGGCTCTCTTAAAAGACATATGCGAATCCATA
CTGGCCACATGCCATTTGAATGCGAGGTATGTGGGAaatcattttcacaa
aaagCGAATCTTGCTAATCACATCAGAATACACACTGGGGAAAAGCCTTT
CGGATGCCAGGAATGTTatCTAAGTAACAAATGATTCTAAAATGAATTAT
GAAATaggaaatttggtcaatttatCAAACAACAATAGATTATCAGCACC
GATGTGTATATCATTTGATCTCAAAAATGGCGATGAAGTTGTTGGTACTT
GCCAATTCACAATGGAAAATGTTTTCTTACAAGTAGAGTTAGTTGATGAC
CATggaaatcatttttcatttaaaccTGGTAAAACACTGAAAACGGggaa
agaaagaaacttttgcTCAAACGAACAAGAACTAGAAGAAACGATAGAAA
TCAAAGTCGAAGAAGACTTATTTGATAACCCTTCATTAGACTGTATTGAA
CCTCCCCTTGTTAACAGTGAATATAGTGGACTGACGCAAGCTATCAAAAT
ACCTACCAGTA
Run BLAST on NCBI

transcript from alignment at sc0004937:1..2116-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044086 ID=TCONS_00044086|Name=TCONS_00044086|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at sc0004937:1..2116- (Clytia hemisphaerica)
GGCGAGAAACCTTTTATGTGTAATGTATGTGGTAACAGATTTACACAAAA AGGTTCTCTTAAAGCTCACATGCGAATCCATACTGGTGTTAAGCCATTCA AATGTGAGGTTTGTGGTAAATCATTTTCTAGCAAGAGAAATGTTGAACGG CACAAAAGAACTCATACTGGTGAAAAACCTTTTAAATGTGAAGTATGCGA GAATAGATTTACAATAAAAGGCTCTCTTAAAAGACATATGCGAATCCATA CTGGCCACATGCCATTTGAATGCGAGGTATGTGGGAAATCATTTTCACAA AAAGCGAATCTTGCTAATCACATCAGAATACACACTGGGGAAAAGCCTTT CGGATGCCAGGAATGTTGTAAGACTTTTTCTCGAAAGGAAAACCTAATAT CCCACACAAGATCTCATACTGGTGAAAGCCGTATAACTGTGAAATTTGTG GTAAATCATTTTTAAGAAAGGCTCATATGGAACGACACAAAAGAACCCAT ACTGTTGAAAAGGAATTTAAATGCAAAGTATGTGGTAAATTATTTTTTCG AAAAGATGTTCTAGAACGACACACAAGAACTCATACTAATGAAAAGCCAT TTAAGGGTTGAGTTTGTGCTAAAGAATACACACAAAAGCATAATTTTGAA ACTCATCTCACAACACATTCAGATGAAAAAGCTTTTAGTCATGAAGTCTA TAGAAGAGAATTTTCAGAAAAGGATAATCTGGAGGACAACATGTTATCTA ATACGGTGTAGTAAAGTTTGTGGAAAATCTTTTTCACAAGAAGTCGGTCT TTTAAATACACACCAGCCTTCATACTGGCTTTCAACCTTAGAAAGGACAC TGATGAAGAAGAAATTAAACCAAACTTTAAACTGGGAATTAACTTATCAA CACTTTTAGACAAGACGTTTTTCATTTGCAAAGTTTTGCACATGCAGCGT TTTACTCAAGTGGTAAGGAGATACAGCTTGAAGCCGACTCGGGGATCTCG GGAGATGGCATGTGGCTTTTACATTTATTAACCCGGTATCCAGGCCTTTT TTCCTGTAAATTTTATTAGCGCTATTATTCTGGTCTGATATTTGCGTCTT TCTTTTTTTTTCATATTTCTCAAGTTAAAGAGGTATGCTTTCAAACTGAG GTGTAATTACTTTTAGATTAAGGAACTGAGAACAATTATACTGATCCTTC AATTTATTCATCGAAATGAACAGTAGATTTTCGTGAAACAGAAAGACAAA GAAAATTAAAAACAGCATCCTAAAATGCTAAATTAGCTGTTTGGTTCAGG GCTAAACATTTCACTTTTGGCTATTTTAAACGAAAAAATGAACAATGAAA CGGATAACGTTGTGAATAAAAAAGTCTTGATCAAAAGAAAGAAATTGAGA CTTAAAAAAAAAAATCTTACCTCGTCAGTGCAGTGGAAAGAAAGGTCATT ATCTACTTATTGTCTCTGTATTCTTTGTTTTCCTTTTTTAGATCTGAGTA ACAAATGATTCTAAAATGAATTATGAAATAGGAAATTTGGTCAGTTTATC AAACAACAATAGACTATCAGCACCGATGTGTATATCATTTGATCTCAAAG AAAACAATCTTGATCAAAAGAAAGAAATTGAGACGTAAAAAAATCTTACC TCGTCAGTGCAGTGGAAAAAAAGGTCATTACCTACTTATTGTCTCATTAT TCTTTCTTTTTTCCTTTTTTAGATCTAAGTAACAAATGATTCTAAAATGA ATTATGAAATAGGAAATTTGGTCAATTTATCAAACAACAATAGATTATCA GCACCGATGTGTATATCATTTGATCTCAAAAATGGCGATGAAGTTGTTGG TACTTGCCAATTCACAATGGAAAATGTTTTCTTACAAGTAGAGTTAGTTG ATGACCATGGAAATCATTTTTCATTTAAACCTGGTAAAACACTGAAAACG GGGAAAGAAAGAAACTTTTGCTCAAACGAACAAGAACTAGAAGAAACGAT AGAAATCAAAGTCGAAGAAGACTTATTTGATAACCCTTCATTAGACTGTA TTGAACCTCCCCTTGTTAACAGTGAATATAGTGGACTGACGCAAGCTATC AAAATACCTACCAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027735XLOC_027735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044086-exon-sc0004937-1575043694:1750..2116TCONS_00044086-exon-sc0004937-1575043694:1750..2116Clytia hemisphaericaexon
TCONS_00044086-exon-sc0004937-1575043694:1..394TCONS_00044086-exon-sc0004937-1575043694:1..394Clytia hemisphaericaexon
TCONS_00044086-exon-sc0004937-1510915933:1750..2116TCONS_00044086-exon-sc0004937-1510915933:1750..2116Clytia hemisphaericaexon
TCONS_00044086-exon-sc0004937-1510915933:1..394TCONS_00044086-exon-sc0004937-1510915933:1..394Clytia hemisphaericaexon
TCONS_00044086-exon-sc0004937-1491911889:1750..2116TCONS_00044086-exon-sc0004937-1491911889:1750..2116Clytia hemisphaericaexon
TCONS_00044086-exon-sc0004937-1491911889:1..394TCONS_00044086-exon-sc0004937-1491911889:1..394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004937supercontigsc0004937:1..2116 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.8344 18.0952 5.07438 2.12378 0 1.13784 5.09435e-07 0.307166 0.205331 0.0298477 0 0 0 1.30065 0 0.579586 0.225844 3.31647 0.437259 0.0371606 1.8743 0.33929 14.0113 11.753 1.55464 0.0380685 1.67883 2.17354 5.54659 5.76987
Blast
BLAST of TCONS_00044086 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 2.452e-42
Identity = 68/122 (55.74%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            GEKP+ C VCG RF    +L  H R+HTG KP+KCE CGK FS   N++ H+  HTGEKPFKC+ C+ RF+    L+ H R+HTG  P++C+ CGK+FSQ++NL  H  IHTGEKPF C+EC
Sbjct:  539 GEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEEC 660          

HSP 2 Score: 147.902 bits (372), Expect = 5.389e-40
Identity = 66/122 (54.10%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            GEKPF CNVCG  F+Q    +AH R+HTG KP+KCEVCGK F+   N+  H+R HTGEKP+KCE C   F+   +L+ H  +HTG  PF+C+ C K FSQ ++L  H R+HTGEKP+ C  C
Sbjct:  511 GEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTC 632          

HSP 3 Score: 147.132 bits (370), Expect = 1.020e-39
Identity = 66/122 (54.10%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            GEKP+ C  CG  F+   S ++H R+HTG KPF+C VCGK FS     + H+R HTGEKP+KCEVC  RF    +L  H R+HTG  P++CE CGK FSQ +NL  H  +HTGEKPF C  C
Sbjct:  483 GEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDAC 604          

HSP 4 Score: 145.976 bits (367), Expect = 2.759e-39
Identity = 63/122 (51.64%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            GEKPF C+ C  RF+Q   L+AH R+HTG KP+KC+ CGK+FS + N++ H+  HTGEKPFKCE C   F+    L  H R+HTG  P+ C+ CGK FSQ ++   H R+HTGE+P+ C  C
Sbjct:  595 GEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVC 716          

HSP 5 Score: 144.436 bits (363), Expect = 7.907e-39
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            GEKP+ C  CG  F+Q  +L+AH  +HTG KPFKC+ C K FS   +++ H+R HTGEKP+KC+ C   F+ + +L+ H  IHTG  PF+CE CGK FS  A L+ H R+HTGEKP+ CQ+C
Sbjct:  567 GEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQC 688          

HSP 6 Score: 142.895 bits (359), Expect = 2.730e-38
Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    4 EKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            EKP+ C+ CG  F+   +L +H R+HTG KP+KCE CGK FSS  + + H+R HTGEKPF+C VC   F+     + H R+HTG  P++CEVCGK F+   NL NH R+HTGEKP+ C+EC
Sbjct:  456 EKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEEC 576          

HSP 7 Score: 140.198 bits (352), Expect = 3.039e-37
Identity = 65/122 (53.28%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            GEKP+ C VCG  FTQ+  L+AH RIHTG KP+KC  CGK FS   N+  H+R HT EKP+KC+ C   F++  +L  H R+HTG  P++CE CGK FS  ++  +H R+HTGEKPF C  C
Sbjct:  399 GEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVC 520          

HSP 8 Score: 139.813 bits (351), Expect = 3.288e-37
Identity = 62/122 (50.82%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            GEKP+ C+ CG  F++   L  H R+HTG KP+KCEVCGK F+ + +++ H+R HTGEKP+KC  C  RF+   +L  H R+HT   P++C+ CGK FS   NL +H R+HTGEKP+ C+EC
Sbjct:  371 GEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEEC 492          

HSP 9 Score: 138.272 bits (347), Expect = 1.278e-36
Identity = 65/122 (53.28%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            GEKP+ C+ CG  F Q   L AH+ IHTG KP++C+ CGK FS   ++  H R HTGEKP+KCEVC   FT +  L+ H RIHTG  P++C  CGK FS  +NL  H R+HT EKP+ C EC
Sbjct:  343 GEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDEC 464          

HSP 10 Score: 137.502 bits (345), Expect = 2.695e-36
Identity = 63/122 (51.64%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            GEKP+ C  CG RF+   +L  H R+HT  KP+KC+ CGK FS   N+  H+R HTGEKP+KCE C   F+   S + H R+HTG  PF C VCGK FSQ +    H R+HTGEKP+ C+ C
Sbjct:  427 GEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVC 548          

HSP 11 Score: 130.183 bits (326), Expect = 9.744e-34
Identity = 58/122 (47.54%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            G+K + C+ CG  F+Q  +L+ H R+HTG KP+ C  CGKSF+   ++  H   HTGEKP++C+ C   F+    L  H R+HTG  P++CEVCGK F+Q+++L  H RIHTGEKP+ C +C
Sbjct:  315 GKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDC 436          

HSP 12 Score: 124.405 bits (311), Expect = 8.878e-32
Identity = 56/113 (49.56%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTG 339
            GEKP+ C+ CG  F+Q+ +L+ H  IHTG KPFKCE CGK FS    +  H+R HTGEKP+ C+ C   F+       H R+HTG  P+ C+VC K FSQ+++L  H R+HTG
Sbjct:  623 GEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTG 735          

HSP 13 Score: 102.834 bits (255), Expect = 2.712e-24
Identity = 54/150 (36.00%), Postives = 72/150 (48.00%), Query Frame = 1
Query:    1 GEKPFMCNVCGNRFTQKGSLKAHMRIH----------------------------TGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            G+K +  N C   F    SL+ H ++H                            TG K + C  CGK FS   N++ H+R HTGEKP+ C  C   F     L  H+ IHTG  P+ C+ CGK FS+  +L  H R+HTGEKP+ C+ C
Sbjct:  259 GQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVC 408          

HSP 14 Score: 77.0258 bits (188), Expect = 7.215e-16
Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 1
Query:   28 CGNRFTQKGSLKAHMRIHTGVKPFKCEVCGKSFSSKRNVERHKRTHTGEKPFKCEVCENRFTIKGSLKRHMRIHTGHMPFECEVCGKSFSQKANLANHIRIHTGEKPFGCQEC 366
            CG + T K S      IHTG K ++   C ++F+   ++E HK+ H G+K   C   E   +    +     + TG   + C  CGK FSQ +NL  H R+HTGEKP+ C EC
Sbjct:  241 CG-KDTLKVSPLTQRSIHTGQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHEC 352          
The following BLAST results are available for this feature:
BLAST of TCONS_00044086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2352.452e-4255.74Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 ... [more]
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