TCONS_00044081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044081
Unique NameTCONS_00044081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044081 ID=TCONS_00044081|Name=TCONS_00044081|organism=Clytia hemisphaerica|type=transcript|length=409bp
aaaaaaatgattgaaattgtAAGGTCTCCTTTCCTTTTAGCTGGACAAAC
ACTCGATCAGTTGGATCCGTGTGGTACAACTCTGTGAGTTCGAGAATACC
ATAATCCCAGGGCTTTACATGATCAAATTAAGAAGAGGACACATCGACTA
AATAGGATGACATTCAAACTTGCAGCTCAGtgGCTGATGAATACACTTTT
GAAAGGTGGGAAAACAGAGGCACTTTCCACACCTGGCTTGCtaaagagga
aagaaaaaagGAGACTGTACCTGGCTATTCAAACTGTTGAAGGGCTGCAA
ACTACAGTCAAGACATCCACTTCATTGATGCAAGAGCTGCTTGTCGAATA
TCCTGGATTTTACACTTTGGCTGGTCGTCTTAGTCAGCCAACCTCAACCT
CAACTTATG
Run BLAST on NCBI

transcript from alignment at sc0004936:315..1162+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044081 ID=TCONS_00044081|Name=TCONS_00044081|organism=Clytia hemisphaerica|type=transcript|length=848bp|location=Sequence derived from alignment at sc0004936:315..1162+ (Clytia hemisphaerica)
aaaaaaatgattgaaattgtAAGGTCTCCTTTCCTTTTAGCTGGACAAAC
ACTCGATCAGTTGGATCCGTGTGGTACAACTCTGTGAGTTCGAGAATACC
ATAATCCCAGGGCTTTACATGATCAAATTAAGAAGAGGACACATCGACTA
AATAGGATGACATTCAAACTTGCAGCTCAGGTAATTTCCATATTAACTCA
AAAATTTTGCTTATGTTACTAATCATACAATTATACAACAGttatcattt
tttatatttttccttcTTATTTTTGACCATGCTAGGTGAAGTCTGAGAAT
TAGGTCTGTCTGAAATAAAATGGCTNAAATGAAATCTCATGATTTTAAAG
GAGCATTTTTTATTTGGTAAGAGATAATGTTGACAGTTTACTTGTGTGTT
GTGACCAAAttataactttttatcattttagtgGCTGATGAATACACTTT
TGAAAGGTGGGAAAACAGAGGCACTTTCCACACCTGGCTTGCtaaagagg
aaagaaaaaagGAGACTGTACCTGGCTATTCAAACTGTTGAAGGGCTGCA
AACTACAGGTTTGTAATGATTTTgcattcaaagtttttttagtatgaaat
agtacaatgttaatttttaagcAATCAATATTTCTGTGAGTGCTCCTGGC
CTTGCATGTTCTGgaggttttttttcaaaatagaaaaccaACACATTCTC
CgtcttttattctttcattcagacttttttcacttttcatctttAGTCAA
GACATCCACTTCATTGATGCAAGAGCTGCTTGTCGAATATCCTGGATTTT
ACACTTTGGCTGGTCGTCTTAGTCAGCCAACCTCAACCTCAACTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027732XLOC_027732Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044081-exon-sc0004936-1491911889:315..494TCONS_00044081-exon-sc0004936-1491911889:315..494Clytia hemisphaericaexon
TCONS_00044081-exon-sc0004936-1510915933:315..494TCONS_00044081-exon-sc0004936-1510915933:315..494Clytia hemisphaericaexon
TCONS_00044081-exon-sc0004936-1575043694:315..494TCONS_00044081-exon-sc0004936-1575043694:315..494Clytia hemisphaericaexon
TCONS_00044081-exon-sc0004936-1491911889:746..872TCONS_00044081-exon-sc0004936-1491911889:746..872Clytia hemisphaericaexon
TCONS_00044081-exon-sc0004936-1510915933:746..872TCONS_00044081-exon-sc0004936-1510915933:746..872Clytia hemisphaericaexon
TCONS_00044081-exon-sc0004936-1575043694:746..872TCONS_00044081-exon-sc0004936-1575043694:746..872Clytia hemisphaericaexon
TCONS_00044081-exon-sc0004936-1491911889:1061..1162TCONS_00044081-exon-sc0004936-1491911889:1061..1162Clytia hemisphaericaexon
TCONS_00044081-exon-sc0004936-1510915933:1061..1162TCONS_00044081-exon-sc0004936-1510915933:1061..1162Clytia hemisphaericaexon
TCONS_00044081-exon-sc0004936-1575043694:1061..1162TCONS_00044081-exon-sc0004936-1575043694:1061..1162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004936supercontigsc0004936:315..1162 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33488	1.14151	0.356293	0.392998	20.0057	16.0672	15.6	11.7705	5.83634	8.64362	3.13417	7.59556	5.35823	5.42365	4.5564	7.10372	4.17884	5.13897	10.2771	12.7272	6.29825	6.13331	7.1622	5.09596	2.6543	2.44158	24.9153	14.4802	8.04347	7.69893
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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