TCONS_00044077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044077
Unique NameTCONS_00044077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044077 ID=TCONS_00044077|Name=TCONS_00044077|organism=Clytia hemisphaerica|type=transcript|length=262bp
GCTCAAAACTGGCAGCAGAGAACACTTTAAAAGCACTCAAGGAGATGGAG
GAGACAAAAAAATTCACNGGCAACAAGAAAGGAGATTCAAGAAGAAGTGA
GAAGAGAAATAAAgacgaaaaagaaattgagattCCTGACAAACTTTGAG
GAGAAGACCTATCTCAATGTCAACACTCAAGCAGATGCCAATCTACTCCT
GAGAGTATGCTTGAATATGATCAAGGCAAAAGCAAATTATGGCGACAAAG
GGACTTGTAGAT
Run BLAST on NCBI

transcript from alignment at sc0004931:562..823

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044077 ID=TCONS_00044077|Name=TCONS_00044077|organism=Clytia hemisphaerica|type=transcript|length=262bp|location=Sequence derived from alignment at sc0004931:562..823 (Clytia hemisphaerica)
ATCTACAAGTCCCTTTGTCGCCATAATTTGCTTTTGCCTTGATCATATTC
AAGCATACTCTCAGGAGTAGATTGGCATCTGCTTGAGTGTTGACATTGAG
ATAGGTCTTCTCCTCAAAGTTTGTCAGGaatctcaatttctttttcgtcT
TTATTTCTCTTCTCACTTCTTCTTGAATCTCCTTTCTTGTTGCCNGTGAA
TTTTTTTGTCTCCTCCATCTCCTTGAGTGCTTTTAAAGTGTTCTCTGCTG
CCAGTTTTGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027729XLOC_027729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044077-exon-sc0004931-1491911889:562..823TCONS_00044077-exon-sc0004931-1491911889:562..823Clytia hemisphaericaexon
TCONS_00044077-exon-sc0004931-1510915933:562..823TCONS_00044077-exon-sc0004931-1510915933:562..823Clytia hemisphaericaexon
TCONS_00044077-exon-sc0004931-1575043694:562..823TCONS_00044077-exon-sc0004931-1575043694:562..823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004931supercontigsc0004931:562..823 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91097	3.72698	5.04862	1.41122	7.73113	4.75163	4.9137	5.36683	2.68389	4.6542	1.93606	0.848462	5.08369	3.9596	1.44681	3.49347	4.30366	2.45062	2.0314	2.12571	3.07938	1.80242	2.19108	1.328	0	1.83111	4.36719	1.86431	3.53504	2.88132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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