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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044060 ID=TCONS_00044060|Name=TCONS_00044060|organism=Clytia hemisphaerica|type=transcript|length=1145bp
GAGCGGAACAGTCAGTTCATGACTTGGCGCTCATGCAGTCAACATGGCgg
aggaaaagaaaattttgtaatatttctttttaaactTGAGAGGTTTTCAA
GATTGTTTAAAGAAACATCAAAGACAAAGTTGTCAAACAAAAGATAAGTT
CTTTCTTTCTACTCtttatttattatattttcTGTCATAAATACACTGCA
AGCTGCTtgatttttccaggaaaaatttaaaaatgtctAATTCTGAGAAA
TCTCTATCAGAATTAAATAAACGTTTGAAAGATATTCAATCCAAAATAAA
GGATATGAAGGATAAACAACAGGAAAGATCAAGCAGTTTGCGGTCGAAAT
CAGATGATGATGGTGAGGAATCCTCATCATCATCACCTTCAACAAGAAGA
ACCAAACATAAAcataagaaaatgaagaaaaaacataGCCGAAAACGTAA
ATCCGGAGGAGAAGAGGAACAACCTGCATCAGTGCATGCAAAAAGGAAGT
GCATCCCAGTGAGGATCGATACTAGCCCAGTGCGGCAAAATCATAGCATA
AATCGTAGCATCGGCTGGGAGACAGACTCGGACAACCCAGCTCCTTTTGA
CGAGATTGACTTATCAGAGCCAGAGGAAATATTCAATGCAAGGGCTAGCC
AAACAGATGGCTATGAGTCACTCAACGAAAATGAGAATCAGAACCCTGTA
GTTTTAGTAGATAAGGAACAGCAAAACAATGGGGAACTAAAAGAGCCAGA
ACTTGAATTAGATGTCGAAAAGCTTGTCTCTGTGTCAACTGAGGAAGAAA
GATCGAGCCCTATTGACGAAAAATTGGCTCAGTTAATTAAGACAAACTGG
GACAGTGAGAAGCcttttgaaaacatgaaaaagattttcaaaacataCCC
TTGCCCAGAAAACTGTACCCTTGACCCCCCAAAAGTAAATGGGGAACTCT
GGAAAATCTTGAACAGTGCCCAAAGAAAGTCAGATGTTAAACTAGTTACC
ATACAGAAATCACTGAAAAAAGCCCTGAATGTAAATCTAAAAATCTTAGA
AGAAGTTAAAAATGGTAACGTATCTGTTCAATCTCTGGCACAGAAAACTG
TGGACATGGCTGCTATTTTGGGCCATGCCTCCCACGAAATTTCAC Run BLAST on NCBI protein sequence of TCONS_00044060-protein >TCONS_00044060-protein ID=TCONS_00044060-protein|Name=TCONS_00044060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MSNSEKSLSELNKRLKDIQSKIKDMKDKQQERSSSLRSKSDDDGEESSSS
SPSTRRTKHKHKKMKKKHSRKRKSGGEEEQPASVHAKRKCIPVRIDTSPV
RQNHSINRSIGWETDSDNPAPFDEIDLSEPEEIFNARASQTDGYESLNEN
ENQNPVVLVDKEQQNNGELKEPELELDVEKLVSVSTEEERSSPIDEKLAQ
LIKTNWDSEKPFENMKKIFKTYPCPENCTLDPPKVNGELWKILNSAQRKS
DVKLVTIQKSLKKALNVNLKILEEVKNGNVSVQSLAQKTVDMAAILGHAS
HEIS Run BLAST on NCBI transcript from alignment at sc0004897:4030..5174 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044060 ID=TCONS_00044060|Name=TCONS_00044060|organism=Clytia hemisphaerica|type=transcript|length=1145bp|location=Sequence derived from alignment at sc0004897:4030..5174 (Clytia hemisphaerica)
GTGAAATTTCGTGGGAGGCATGGCCCAAAATAGCAGCCATGTCCACAGTT
TTCTGTGCCAGAGATTGAACAGATACGTTACCATTTTTAACTTCTTCTAA
GATTTTTAGATTTACATTCAGGGCTTTTTTCAGTGATTTCTGTATGGTAA
CTAGTTTAACATCTGACTTTCTTTGGGCACTGTTCAAGATTTTCCAGAGT
TCCCCATTTACTTTTGGGGGGTCAAGGGTACAGTTTTCTGGGCAAGGGta
tgttttgaaaatctttttcatgttttcaaaagGCTTCTCACTGTCCCAGT
TTGTCTTAATTAACTGAGCCAATTTTTCGTCAATAGGGCTCGATCTTTCT
TCCTCAGTTGACACAGAGACAAGCTTTTCGACATCTAATTCAAGTTCTGG
CTCTTTTAGTTCCCCATTGTTTTGCTGTTCCTTATCTACTAAAACTACAG
GGTTCTGATTCTCATTTTCGTTGAGTGACTCATAGCCATCTGTTTGGCTA
GCCCTTGCATTGAATATTTCCTCTGGCTCTGATAAGTCAATCTCGTCAAA
AGGAGCTGGGTTGTCCGAGTCTGTCTCCCAGCCGATGCTACGATTTATGC
TATGATTTTGCCGCACTGGGCTAGTATCGATCCTCACTGGGATGCACTTC
CTTTTTGCATGCACTGATGCAGGTTGTTCCTCTTCTCCTCCGGATTTACG
TTTTCGGCtatgttttttcttcattttcttatgTTTATGTTTGGTTCTTC
TTGTTGAAGGTGATGATGATGAGGATTCCTCACCATCATCATCTGATTTC
GACCGCAAACTGCTTGATCTTTCCTGTTGTTTATCCTTCATATCCTTTAT
TTTGGATTGAATATCTTTCAAACGTTTATTTAATTCTGATAGAGATTTCT
CAGAATTagacatttttaaatttttcctggaaaaatcaAGCAGCTTGCAG
TGTATTTATGACAgaaaatataataaataaaGAGTAGAAAGAAAGAACTT
ATCTTTTGTTTGACAACTTTGTCTTTGATGTTTCTTTAAACAATCTTGAA
AACCTCTCAagtttaaaaagaaatattacaaaattttcttttcctccGCC
ATGTTGACTGCATGAGCGCCAAGTCATGAACTGACTGTTCCGCTC Coding sequence (CDS) from alignment at sc0004897:4030..5174 >TCONS_00044060 ID=TCONS_00044060|Name=TCONS_00044060|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at sc0004897:4030..5174 (Clytia hemisphaerica)
TGAAATTTCGTGGGAGGCATGGCCCAAAATAGCAGCCATGTCCACAGTTT
TCTGTGCCAGAGATTGAACAGATACGTTACCATTTTTAACTTCTTCTAAG
ATTTTTAGATTTACATTCAGGGCTTTTTTCAGTGATTTCTGTATGGTAAC
TAGTTTAACATCTGACTTTCTTTGGGCACTGTTCAAGATTTTCCAGAGTT
CCCCATTTACTTTTGGGGGGTCAAGGGTACAGTTTTCTGGGCAAGGGtat
gttttgaaaatctttttcatgttttcaaaagGCTTCTCACTGTCCCAGTT
TGTCTTAATTAACTGAGCCAATTTTTCGTCAATAGGGCTCGATCTTTCTT
CCTCAGTTGACACAGAGACAAGCTTTTCGACATCTAATTCAAGTTCTGGC
TCTTTTAGTTCCCCATTGTTTTGCTGTTCCTTATCTACTAAAACTACAGG
GTTCTGATTCTCATTTTCGTTGAGTGACTCATAGCCATCTGTTTGGCTAG
CCCTTGCATTGAATATTTCCTCTGGCTCTGATAAGTCAATCTCGTCAAAA
GGAGCTGGGTTGTCCGAGTCTGTCTCCCAGCCGATGCTACGATTTATGCT
ATGATTTTGCCGCACTGGGCTAGTATCGATCCTCACTGGGATGCACTTCC
TTTTTGCATGCACTGATGCAGGTTGTTCCTCTTCTCCTCCGGATTTACGT
TTTCGGCtatgttttttcttcattttcttatgTTTATGTTTGGTTCTTCT
TGTTGAAGGTGATGATGATGAGGATTCCTCACCATCATCATCTGATTTCG
ACCGCAAACTGCTTGATCTTTCCTGTTGTTTATCCTTCATATCCTTTATT
TTGGATTGAATATCTTTCAAACGTTTATTTAATTCTGATAGAGATTTCTC
AGAATTagacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044060-exon-sc0004897-1491911889:4030..5174 | TCONS_00044060-exon-sc0004897-1491911889:4030..5174 | Clytia hemisphaerica | exon |
| TCONS_00044060-exon-sc0004897-1510915933:4030..5174 | TCONS_00044060-exon-sc0004897-1510915933:4030..5174 | Clytia hemisphaerica | exon |
| TCONS_00044060-exon-sc0004897-1575043694:4030..5174 | TCONS_00044060-exon-sc0004897-1575043694:4030..5174 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004897 | supercontig | sc0004897:4030..5174 . |
Blast
The following BLAST results are available for this feature:
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