TCONS_00044051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044051
Unique NameTCONS_00044051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length996

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044051 ID=TCONS_00044051|Name=TCONS_00044051|organism=Clytia hemisphaerica|type=transcript|length=996bp
CACGATAAgtgttttaagtgttttaaTTACTTCTTCTTAATATATCTGAA
CTTtaatacactttttctcgaaATCGTCATGGGAAGTATGGGGCGTAAAC
TCAAGAATTCTTTGAGAATAAGGTCCAATAGGTTTTTGCATCTTGAAAAG
TCACTTTTGAAAAGCAGAATCTTCACACTTTTTAAACTCTTCTATTTTTG
TACACTTACTAGAATGGATGTGATTTCCTGTTGACGTATTACGACGACCC
GAAAATGATGTTGCCGCAACGCGTGCTTGACGTGGCAGCATCAAAAGGAA
TATCACAATCAATGTTGAGAATGTATCGTGCAGCAgttatgctgaatgag
atggagaaaaaagagaaatgaaaaaaagcCCTAAAGAAATTCGATGGACA
GAGTGGTTTGATCGTTAGTGCTTTCGAGCAAAGTAGAAGTTGATTCTTCT
ACAGATCTTAGGTGATTAGAAAGGACATTCCACATACAAGCAGCTGCTTT
TAGAGAATCTCTGATGATATTATGATAAAGCTGCATAATTCAAACCCGGT
TATGTCTAGTGCTTTCTATGGACCTGTACTAACTCACGTGAACTATATCT
TTTGGCTAGCTGAGTACCTCACCAGGCTAGCCCTTTCAGAATCAGAGGAA
GTGATCTCGCGGCTTATTGCAATTGCAAGGTGATAAGTAGTATGACGAAG
TATGACTTGCGCTACATTCTTGAGATGAATAAAAAAGAACCTATATTTAA
TGTGATAATTGTTGTTCCGGTGGTGCATTGAGAGGCTGTTATGTTGCCTC
AATTTCTTTgactagaaaaattttcctaCATATTTTTATGCATAGAATTT
TTAAcacttagtttttttttcaaatatttcgtaTTATTGTAAGCATGTAG
GTTTTCAGTGCATACATGCACTTTCTTAGGAATAATGATATTTTGTGTCT
TGTATTTTTGTGAATGAGATTATTTTAGAAATAGAatgttgaaaaa
Run BLAST on NCBI

transcript from alignment at sc0004891:768..2328-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044051 ID=TCONS_00044051|Name=TCONS_00044051|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at sc0004891:768..2328- (Clytia hemisphaerica)
CACGATAAGTGTTTTAAGTGTTTTAATTACTTCTTCTTAATATATCTGAA
CTTTAATACACTTTTTCTCGAAATCGTCATGGGAAGTATGGGGCGTAAAC
TCAAGAATTCTTTGAGAATAAGGTCCAATAGGTTTTTGCATCTTGAAAAG
TCACTTTTGAAAAGCAGAATCTTCACACTTTTTAAACTCTTCTATTTTTG
TACACTTACTAGAATGGATGTGATTTCCTGTTGACGTATTACGACGACCC
GAAAATGATGTTGCCGCAACGCGTGCTTGACGTGGCAGCATCAAAAGGTA
AGTTTCAAAGATTGGATTCCAGCAAGAGGTTTAATATTGAGATTCCAGTG
ACGGTTTTAATCGTGTTAATAAGGGTTTTGTTTTGAGATCTCGATTGGTC
ACATATAGCTCAACCTTTATCGTACGATCACTACCGCGCTCAAAAGCTAA
TGTCAAATGTACTCCGTTTTAGCTGACTTTGTTTACTTTCGAAACACTTG
TAACAGGTATTTGAAGGTCATTTGCTTTAAGCCAATCTAAGGTACATCCA
AGTATAAGCTGATTTCGAGGCTGATTTTGAGACTTGAAGGCGATTCTTTA
TAATCCAGTCGGTTTTGACCTGAAAGCTCCTTTTTCGATAGCCATTTACT
AGAAAGTAGGGAAGGGCGCCACTGGATTGCTCTACTAACCCTTAATTGTT
CTCTGATTGCCGAGCATTAAGCAGAGAGGCATCCAGTACCAAGTACAAGG
TCTTCGCTATGACCCGGCCGTCAGGGATTGAACCCATGAGCTTGTGCATT
GTAGCCGAATGCAATGCTCTATTTTTGTAGTAGTAGTTCAACTCCTTTTT
ACACTTTTTCAGGAATATCACAATCAATGTTGAGAATGTATCGTGCAGCA
GTTATGCTGAATGAGATGGAGAAAAAAGAGAAATGAAAAAAAGCCCTAAA
GAAATTCGATGGACAGAGTGGTTTGATCGTTAGTGCTTTCGAGCAAAGTA
GAAGTTGATTCTTCTACAGATCTTAGGTGATTAGAAAGGACATTCCACAT
ACAAGCAGCTGCTTTTAGAGAATCTCTGATGATATTATGATAAAGCTGCA
TAATTCAAACCCGGTTATGTCTAGTGCTTTCTATGGACCTGTACTAACTC
ACGTGAACTATATCTTTTGGCTAGCTGAGTACCTCACCAGGCTAGCCCTT
TCAGAATCAGAGGAAGTGATCTCGCGGCTTATTGCAATTGCAAGGTGATA
AGTAGTATGACGAAGTATGACTTGCGCTACATTCTTGAGATGAATAAAAA
AGAACCTATATTTAATGTGATAATTGTTGTTCCGGTGGTGCATTGAGAGG
CTGTTATGTTGCCTCAATTTCTTTGACTAGAAAAATTTTCCTACATATTT
TTATGCATAGAATTTTTAACACTTAGTTTTTTTTTCAAATATTTCGTATT
ATTGTAAGCATGTAGGTTTTCAGTGCATACATGCACTTTCTTAGGAATAA
TGATATTTTGTGTCTTGTATTTTTGTGAATGAGATTATTTTAGAAATAGA
ATGTTGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027704XLOC_027704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044051-exon-sc0004891-1575043694:2032..2328TCONS_00044051-exon-sc0004891-1575043694:2032..2328Clytia hemisphaericaexon
TCONS_00044051-exon-sc0004891-1575043694:768..1466TCONS_00044051-exon-sc0004891-1575043694:768..1466Clytia hemisphaericaexon
TCONS_00044051-exon-sc0004891-1510915933:2032..2328TCONS_00044051-exon-sc0004891-1510915933:2032..2328Clytia hemisphaericaexon
TCONS_00044051-exon-sc0004891-1510915933:768..1466TCONS_00044051-exon-sc0004891-1510915933:768..1466Clytia hemisphaericaexon
TCONS_00044051-exon-sc0004891-1491911889:2032..2328TCONS_00044051-exon-sc0004891-1491911889:2032..2328Clytia hemisphaericaexon
TCONS_00044051-exon-sc0004891-1491911889:768..1466TCONS_00044051-exon-sc0004891-1491911889:768..1466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004891supercontigsc0004891:768..2328 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.7707	11.1266	3.22892	2.76244	6.11988	4.44881	8.64216	10.4421	8.70809	16.3707	10.1749	8.56614	6.01096	5.13595	3.15968	3.39407	6.55711	3.55291	3.01278	3.2487	2.52094	3.05244	7.7005	7.34525	15.6956	13.8911	4.08066	2.40518	2.57783	4.72152
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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