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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044023 ID=TCONS_00044023|Name=TCONS_00044023|organism=Clytia hemisphaerica|type=transcript|length=630bp
GAATTATTTAAAATTTGgCCATGTCACCTAAATTGATCTTCGTTATCTTG
ATTTTGATCCAAGCATCATCCAACAATGGAAAGATTGTTCGTAACAAGAT
CATTGAATCACCTAAtggaaacaaaatcaaaatccaTTACATTATCATGA
CCAGATTTAATAACAAGAAGCTCCAAGGGCCAACATCTATTCAAACAACC
ATGGTTAAAAGTGTTAGCCATTGCAAAGCAGAATGTATCTGGGTTAACAG
CTGTATCTCCTTCAATGTCTTCCCGGCTGGGTCATNATCTATTCAAACAA
CCATGGTTAAAAGTGTTAGCCATTGCAAAGCAGAATGTATCCGGGTTAAC
AGCTGTATCTCCTTCAATATTTTTCCGGCTGGGTCATTTTTTGATTGTCA
ACTTTTTGACACAGATCATTATATTGACCAGCAAATTTTAACAGATCAAA
CGGGATATCAATACTTCGTTATAAAGAGTAATTGCAGTGTTGGAGATCCA
AACCTTAAATGTCCAAATGAATTCACATACTGTAAACCAAACTATGATAC
AGACACCTCCACGTGTGAATGTCGTTTTCCAGGTTGCTTAGATCCAGTGG
TTTATACTTGCACACCAGGTCCAACCATAA Run BLAST on NCBI protein sequence of TCONS_00044023-protein >TCONS_00044023-protein ID=TCONS_00044023-protein|Name=TCONS_00044023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MSPKLIFVILILIQASSNNGKIVRNKIIESPNGNKIKIHYIIMTRFNNKK
LQGPTSIQTTMVKSVSHCKAECIWVNSCISFNVFPAGSXSIQTTMVKSVS
HCKAECIRVNSCISFNIFPAGSFFDCQLFDTDHYIDQQILTDQTGYQYFV
IKSNCSVGDPNLKCPNEFTYCKPNYDTDTSTCECRFPGCLDPVVYTCTPG
PTI Run BLAST on NCBI transcript from alignment at sc0004859:904..2999- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044023 ID=TCONS_00044023|Name=TCONS_00044023|organism=Clytia hemisphaerica|type=transcript|length=2096bp|location=Sequence derived from alignment at sc0004859:904..2999- (Clytia hemisphaerica)
GAATTATTTAAAATTTGGTAAGTACAATATATTTTAAAAATGTCGTTTAG
CTTTTAGATTCAACTTACCTTATAACATGAAAATAAATATGGAAGTATTT
AACGGCCTTGAAATTAACACGCAAAAAATTAACACGAACTTTATTTGCTT
TTTTAAGGACACCACGGCTGGTTTTAATTAAGGGGGTTTTTATTAACACG
AAATTTTTCAATTCGTGTTAAATACTTCCATATTTATTTTCATGTGATAA
GGTAGCAAGCAAAAGCTAATCGTTGGTTAATCGAAATTTTTATTAATAAA
AAGATTCGAAGTCTATTTCCATTGGCAGTTGAGAAAGGGTAAAGAATCGA
CTGAGTACCATCTTCTGCGACATTAAATGAACCAGTGATCGACTTTTTAG
AGGTGCCAAAGCCTTTGATTACAAGTTTCAGTTTTTCAACTTTAGCAAAA
AAATTGTAAATTTCTGCAATTGCAAGACTTGCAAGCAATTCATCTGTAGA
AAATTTCTTTACTATTGAAGCGTCAGAATACTTCCAAGTTTGGTGTTGCT
TATAAAAAAAGGTGTATTGGCAAAGCTAACACACTGCTGCTAGCTTTGAA
AAAAATAACCCTCTCCCCCAAACAAATTCTTGATCCATTTTTAAGTTTGA
TATTAAATTTTTTTTACAGGCCATGTCACCTAAATTGATCTTCGTTATCT
TGATTTTGATCCAAGCATCATCCAACAATGGAAAGATTGTTCGTAACAAG
ATCATTGAATCACCTAATGGAAACAAAATCAAAATCCATTACATTATCAT
GACCAGATTTAATAACAAGAAGCTCCAAGGGCCAACATCTATTCAAACAA
CCATGGTTAAAAGTGTTAGCCATTGCAAAGCAGAATGTATCTGGGTTAAC
AGCTGTATCTCCTTCAATGTCTTCCCGGCTGGGTCATNATCTATTCAAAC
AACCATGGTTAAAAGTGTTAGCCATTGCAAAGCAGAATGTATCCGGGTTA
ACAGCTGTATCTCCTTCAATATTTTTCCGGCTGGGTCATTTTTTGATTGT
CAACTTTTTGACACAGATCATTATATTGACCAGCAAATTTTAACAGATCA
AACGGGATATCAATACTTCGTTATAAAGGTATTATCCTAAGTATTAAAGT
ATGAATTCCTAAAGAATACCGAAATTGGACACATAATCCCTCTCCCTTGT
ATATCATTATTTCCCGATGCTTACACTAAAATAGCAGGTTCTTAAAGAAA
AAGAAATTCAAAAAACTCCAACAAAATTATTTTTTTTTGTGGAAACTATA
ATAAGAAGCTTTTGTTAGACCATGTTCTCACGCGACGACTCCGTTTCACT
CCAAAACGAAATGAAGCTATTCTATTGGTTACATTCAAGTGTTACGTCAC
TTCTAACCAATAGAATGGCTTCATTCTGTGTGGAGACTAAAAGAAGGAGC
TTTTTCTTTAAGGATATGGATTTGTTTGAAGATTGAAAGAATTTTTCATT
AAGAATTACCTAAGAAGGAACAGAAGAATTCCCTAATTCCCCAAAAATAA
TCAAAGCTCAACTTAGAGGTTTTCTTTTTACATAAGTGCTCCCGTTCCAT
ATCAGGCACATATTTCATATCAGGATAGTGTCCCCCTATTGTTATACTGT
GCTGATACAAACAAAAAATTTATTTTCTTTTCCTCTTTTTGAATCGTGCT
CTAAATCCGTGTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTGATG
AGTAAGCAAACGATATCACTCTTATTTAAAAACAAAACTAAACAAAGCCT
AAAATTTTCCTAAAAAGAACAAGAAGAGTCGATTTCCCATGGATCTCAAC
TTAAGTCTGTTACCGTTTATATTTTCAAGACAATCTGCCAAACTCCTGCC
ATACAGAATCAGAAACCAGAGTTATTTTGTGATTTATTTCAGAGTAATTG
CAGTGTTGGAGATCCAAACCTTAAATGTCCAAATGAATTCACATACTGTA
AACCAAACTATGATACAGACACCTCCACGTGTGAATGTCGTTTTCCAGGT
TGCTTAGATCCAGTGGTTTATACTTGCACACCAGGTCCAACCATAA Coding sequence (CDS) from alignment at sc0004859:904..2999- >TCONS_00044023 ID=TCONS_00044023|Name=TCONS_00044023|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at sc0004859:904..2999- (Clytia hemisphaerica)
AGTAATTGCAGTGTTGGAGATCCAAACCTTAAATGTCCAAATGAATTCAC
ATACTGTAAACCAAACTATGATACAGACACCTCCACGTGTGAATGTCGTT
TTCCAGGTTGCTTAGATCCAGTGGTTTATACTTGCACACCAGGTCCAACC
ATAATGTCACCTAAATTGATCTTCGTTATCTTGATTTTGATCCAAGCATC
ATCCAACAATGGAAAGATTGTTCGTAACAAGATCATTGAATCACCTAATG
GAAACAAAATCAAAATCCATTACATTATCATGACCAGATTTAATAACAAG
AAGCTCCAAGGGCCAACATCTATTCAAACAACCATGGTTAAAAGTGTTAG
CCATTGCAAAGCAGAATGTATCTGGGTTAACAGCTGTATCTCCTTCAATG
TCTTCCCGGCTGGGTCATNATCTATTCAAACAACCATGGTTAAAAGTGTT
AGCCATTGCAAAGCAGAATGTATCCGGGTTAACAGCTGTATCTCCTTCAA
TATTTTTCCGGCTGGGTCATTTTTTGATTGTCAACTTTTTGACACAGATC
ATTATATTGACCAGCAAATTTTAACAGATCAAACGGGATATCAATACTTC
GTTATAAAGAGTAATTGCAGTGTTGGAGATCCAAACCTTAAATGTCCAAA
TGAATTCACATACTGTAAACCAAACTATGATACAGACACCTCCACGTGTG
AATGTCGTTTTCCAGGTTGCTTAGATCCAGTGGTTTATACTTGCACACCA
GGTCCAACCATAATGTCACCTAAATTGATCTTCGTTATCTTGATTTTGAT
CCAAGCATCATCCAACAATGGAAAGATTGTTCGTAACAAGATCATTGAAT
CACCTAATGGAAACAAAATCAAAATCCATTACATTATCATGACCAGATTT
AATAACAAGAAGCTCCAAGGGCCAACATCTATTCAAACAACCATGGTTAA
AAGTGTTAGCCATTGCAAAGCAGAATGTATCTGGGTTAACAGCTGTATCT
CCTTCAATGTCTTCCCGGCTGGGTCATNATCTATTCAAACAACCATGGTT
AAAAGTGTTAGCCATTGCAAAGCAGAATGTATCCGGGTTAACAGCTGTAT
CTCCTTCAATATTTTTCCGGCTGGGTCATTTTTTGATTGTCAACTTTTTG
ACACAGATCATTATATTGACCAGCAAATTTTAACAGATCAAACGGGATAT
CAATACTTCGTTATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044023-exon-sc0004859-1575043694:2983..2999 | TCONS_00044023-exon-sc0004859-1575043694:2983..2999 | Clytia hemisphaerica | exon |
| TCONS_00044023-exon-sc0004859-1575043694:1872..2330 | TCONS_00044023-exon-sc0004859-1575043694:1872..2330 | Clytia hemisphaerica | exon |
| TCONS_00044023-exon-sc0004859-1575043694:904..1057 | TCONS_00044023-exon-sc0004859-1575043694:904..1057 | Clytia hemisphaerica | exon |
| TCONS_00044023-exon-sc0004859-1510915933:2983..2999 | TCONS_00044023-exon-sc0004859-1510915933:2983..2999 | Clytia hemisphaerica | exon |
| TCONS_00044023-exon-sc0004859-1510915933:1872..2330 | TCONS_00044023-exon-sc0004859-1510915933:1872..2330 | Clytia hemisphaerica | exon |
| TCONS_00044023-exon-sc0004859-1510915933:904..1057 | TCONS_00044023-exon-sc0004859-1510915933:904..1057 | Clytia hemisphaerica | exon |
| TCONS_00044023-exon-sc0004859-1491911889:2983..2999 | TCONS_00044023-exon-sc0004859-1491911889:2983..2999 | Clytia hemisphaerica | exon |
| TCONS_00044023-exon-sc0004859-1491911889:1872..2330 | TCONS_00044023-exon-sc0004859-1491911889:1872..2330 | Clytia hemisphaerica | exon |
| TCONS_00044023-exon-sc0004859-1491911889:904..1057 | TCONS_00044023-exon-sc0004859-1491911889:904..1057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004859 | supercontig | sc0004859:904..2999 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
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