TCONS_00044016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044016
Unique NameTCONS_00044016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044016 ID=TCONS_00044016|Name=TCONS_00044016|organism=Clytia hemisphaerica|type=transcript|length=237bp
ttcttctattgaTTATGGTGTAAATGCCTGAAAGCTGCTTTAAATGGAGT
TAGTTGAACAGGAAGTATTCAGCCCTCAGACAGCGATGAGATTTTAGCTA
CACCAAGTGTATCCGCATGTGGGCGGATGAGGCCATATAAAATAAACACG
AAAAACCAACGCCCATTACACgcccctcaaaatgaaaattacacaaattt
gaataatcgaggcaacctatattcgaaaaaagatagt
Run BLAST on NCBI

transcript from alignment at sc0004848:3207..3443

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044016 ID=TCONS_00044016|Name=TCONS_00044016|organism=Clytia hemisphaerica|type=transcript|length=237bp|location=Sequence derived from alignment at sc0004848:3207..3443 (Clytia hemisphaerica)
actatcttttttcgaatataggttgcctcgattattcaaatttgtgtaat
tttcattttgaggggcGTGTAATGGGCGTTGGTTTTTCGTGTTTATTTTA
TATGGCCTCATCCGCCCACATGCGGATACACTTGGTGTAGCTAAAATCTC
ATCGCTGTCTGAGGGCTGAATACTTCCTGTTCAACTAACTCCATTTAAAG
CAGCTTTCAGGCATTTACACCATAAtcaatagaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027672XLOC_027672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044016-exon-sc0004848-1491911889:3207..3443TCONS_00044016-exon-sc0004848-1491911889:3207..3443Clytia hemisphaericaexon
TCONS_00044016-exon-sc0004848-1510915933:3207..3443TCONS_00044016-exon-sc0004848-1510915933:3207..3443Clytia hemisphaericaexon
TCONS_00044016-exon-sc0004848-1575043694:3207..3443TCONS_00044016-exon-sc0004848-1575043694:3207..3443Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004848supercontigsc0004848:3207..3443 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	5.68698	8.87008	8.54068	5.17663	5.54202	12.1121	10.0394	2.73341	5.99494	5.5985	1.40391	1.05063	3.3405	3.32764	5.17081	3.98205	10.0688	10.6433	0	0	0.0588808	0	7.81956	1.10172	6.49944	0	1.30517	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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