TCONS_00044015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044015
Unique NameTCONS_00044015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044015 ID=TCONS_00044015|Name=TCONS_00044015|organism=Clytia hemisphaerica|type=transcript|length=291bp
atcctcttttttgggtagcttggcccgtaaaacaacaaattaaattgacc
TCGCCTAAGACAAAACTAAACCATAAAATGTCCTATCATGATTGTTATTT
CATAAATTGGATTATACCTTGACATCAAAATAACCGGTGAATAATAACGA
ACCAATGGTCAAAAGGAGGGTACCAAGAGTGAACAAGAATATTGCTAATC
CGATTGCTTTGTAAGGTATTTTTGGAGGTGGTTCTCTAAACTGTAAAAAT
AAGGGacagaaattataaaaaagatatatAGATATAAAGAT
Run BLAST on NCBI

transcript from alignment at sc0004848:129..419

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044015 ID=TCONS_00044015|Name=TCONS_00044015|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at sc0004848:129..419 (Clytia hemisphaerica)
ATCTTTATATCTatatatcttttttataatttctgtCCCTTATTTTTACA
GTTTAGAGAACCACCTCCAAAAATACCTTACAAAGCAATCGGATTAGCAA
TATTCTTGTTCACTCTTGGTACCCTCCTTTTGACCATTGGTTCGTTATTA
TTCACCGGTTATTTTGATGTCAAGGTATAATCCAATTTATGAAATAACAA
TCATGATAGGACATTTTATGGTTTAGTTTTGTCTTAGGCGAggtcaattt
aatttgttgttttacgggccaagctacccaaaaaagaggat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027671XLOC_027671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044015-exon-sc0004848-1491911889:129..419TCONS_00044015-exon-sc0004848-1491911889:129..419Clytia hemisphaericaexon
TCONS_00044015-exon-sc0004848-1510915933:129..419TCONS_00044015-exon-sc0004848-1510915933:129..419Clytia hemisphaericaexon
TCONS_00044015-exon-sc0004848-1575043694:129..419TCONS_00044015-exon-sc0004848-1575043694:129..419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004848supercontigsc0004848:129..419 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.2985	16.6226	11.5989	9.53066	0	1.18118	0	0	6.3651	8.87547	2.97846	5.71602	3.64393	3.27512	3.96713	7.19821	8.33493	5.39548	7.00467	6.37288	6.01727	2.62419	9.61088	8.55464	0	0	7.41464	0.714029	4.06785	5.07493
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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