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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044014 ID=TCONS_00044014|Name=TCONS_00044014|organism=Clytia hemisphaerica|type=transcript|length=411bp
GGTCAGGCCATGACTTATCAATCGCATCTGGCCATTCCAAAAAGATCTTT
GTTATCAAATTTCATCCCGAAGATCGAAATGTATTCCTGTCTGCAAGCTG
GGACCGAACTGTCAAGATCTGGGATTTGAGAACGGAGTACGCCGTGCGCA
CTATTAATGGTCCTTACGTATGCGGTGACGGTGTAGATCTTTTCCAAGGG
AAAATTGTTAGTGCGTCGTGGAAAGCTCAAGATGCATTGCAGCTTTGGGA
TTACGGTAGTGGTAAGCTGATTTCCACCTTGAGCTGGCCTACAACAAACA
GACGTGGAGAGTATTTGTATTGTGCAAGGTTTTGGGATAACAGCCATGTA
GTGGCTGGTGGAAGTGGAACGAACGATCTGAAAATGATTAATATCACTTC
GAATGAGGTAA Run BLAST on NCBI protein sequence of TCONS_00044014-protein >TCONS_00044014-protein ID=TCONS_00044014-protein|Name=TCONS_00044014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
SGHDLSIASGHSKKIFVIKFHPEDRNVFLSASWDRTVKIWDLRTEYAVRT
INGPYVCGDGVDLFQGKIVSASWKAQDALQLWDYGSGKLISTLSWPTTNR
RGEYLYCARFWDNSHVVAGGSGTNDLKMINITSNEV Run BLAST on NCBI transcript from alignment at sc0004848:3520..4564- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044014 ID=TCONS_00044014|Name=TCONS_00044014|organism=Clytia hemisphaerica|type=transcript|length=1045bp|location=Sequence derived from alignment at sc0004848:3520..4564- (Clytia hemisphaerica)
GGTCAGGCCATGACTTATCAATCGCATCTGGCCATTCCAAAAAGATCTTT
GTTATCAAATTTCATCCCGAAGATCGAAATGTATTCCTGTCTGCAAGCTG
GGACCGAACTGTCAAGGTTAGAATTTTTGTGAAGAAATGGAGAATCTGGA
CACAGTATTCCTTGAAACATGTTTTTCTTCTATAGGCATAACATTTATAA
GCATGTACAGGCCAAGTTTTTTCACACCATAACATGATGACATGACGATA
TTAGACGGACTATACAAACTTGTCCCCTTGATTCTGGAAGACTTACTTAA
TTGGACATTATTTTCATGTCCTCGTAACTTTCACTTTTTTACTTCATAAG
ATAGTTTACGATCTTTCTCTCTTTAGATCTGGGATTTGAGAACGGAGTAC
GCCGTGCGCACTATTAATGGTCCTTACGTATGCGGTGACGGTGTAGATCT
TTTCCAAGGGAAAATTGTTAGTGCGTCGTGGAAAGCTCAAGATGCATTGC
AGGTAAATTCTTTATGTTATCCCTTATTGCTTAACCACCAGTACTCACAT
TCTTAACTATTTGTTAATTAGCCACGTAGGTCTATAGAGAAGTATCACTT
TACCTTGATAATAGCCCGAGGATACTAGGTTTACAGGATGTTTTTAGGGG
AATCAGAATTTGCCTATTTTCCGACTCTTAATTGGACTGAGATTTAATTT
TTCTGATTTTTCAAACGCTTACAGGGACTGCCAGGTTTCAAAAAGATACC
CTTAAGGGCGGCACATACACGTACCTTCACTTGCCTAAGTACCCCCCCCC
TGGATAATAGACCCTGTCTATTTCAAACCTTTTATTTGAATCCTAATTTA
ATTGTATTCATACTTTTAATTATCAGCTTTGGGATTACGGTAGTGGTAAG
CTGATTTCCACCTTGAGCTGGCCTACAACAAACAGACGTGGAGAGTATTT
GTATTGTGCAAGGTTTTGGGATAACAGCCATGTAGTGGCTGGTGGAAGTG
GAACGAACGATCTGAAAATGATTAATATCACTTCGAATGAGGTAA Coding sequence (CDS) from alignment at sc0004848:3520..4564- >TCONS_00044014 ID=TCONS_00044014|Name=TCONS_00044014|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0004848:3520..4564- (Clytia hemisphaerica)
CTTTGGGATTACGGTAGTGGTAAGCTGATTTCCACCTTGAGCTGGCCTAC
AACAAACAGACGTGGAGAGTATTTGTATTGTGCAAGGTTTTGGGATAACA
GCCATGTAGTGGCTGGTGGAAGTGGAACGAACGATCTGAAAATGATTAAT
ATCACTTCGAATGAGGTAATCTGGGATTTGAGAACGGAGTACGCCGTGCG
CACTATTAATGGTCCTTACGTATGCGGTGACGGTGTAGATCTTTTCCAAG
GGAAAATTGTTAGTGCGTCGTGGAAAGCTCAAGATGCATTGCAGTCAGGC
CATGACTTATCAATCGCATCTGGCCATTCCAAAAAGATCTTTGTTATCAA
ATTTCATCCCGAAGATCGAAATGTATTCCTGTCTGCAAGCTGGGACCGAA
CTGTCAAGCTTTGGGATTACGGTAGTGGTAAGCTGATTTCCACCTTGAGC
TGGCCTACAACAAACAGACGTGGAGAGTATTTGTATTGTGCAAGGTTTTG
GGATAACAGCCATGTAGTGGCTGGTGGAAGTGGAACGAACGATCTGAAAA
TGATTAATATCACTTCGAATGAGGTAATCTGGGATTTGAGAACGGAGTAC
GCCGTGCGCACTATTAATGGTCCTTACGTATGCGGTGACGGTGTAGATCT
TTTCCAAGGGAAAATTGTTAGTGCGTCGTGGAAAGCTCAAGATGCATTGC
AGTCAGGCCATGACTTATCAATCGCATCTGGCCATTCCAAAAAGATCTTT
GTTATCAAATTTCATCCCGAAGATCGAAATGTATTCCTGTCTGCAAGCTG
GGACCGAACTGTCAAGCTTTGGGATTACGGTAGTGGTAAGCTGATTTCCA
CCTTGAGCTGGCCTACAACAAACAGACGTGGAGAGTATTTGTATTGTGCA
AGGTTTTGGGATAACAGCCATGTAGTGGCTGGTGGAAGTGGAACGAACGA
TCTGAAAATGATTAATATCACTTCGAATGAGGTAATCTGGGATTTGAGAA
CGGAGTACGCCGTGCGCACTATTAATGGTCCTTACGTATGCGGTGACGGT
GTAGATCTTTTCCAAGGGAAAATTGTTAGTGCGTCGTGGAAAGCTCAAGA
TGCATTGCAGTCAGGCCATGACTTATCAATCGCATCTGGCCATTCCAAAA
AGATCTTTGTTATCAAATTTCATCCCGAAGATCGAAATGTATTCCTGTCT
GCAAGCTGGGACCGAACTGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044014-exon-sc0004848-1575043694:4449..4564 | TCONS_00044014-exon-sc0004848-1575043694:4449..4564 | Clytia hemisphaerica | exon |
| TCONS_00044014-exon-sc0004848-1575043694:4063..4188 | TCONS_00044014-exon-sc0004848-1575043694:4063..4188 | Clytia hemisphaerica | exon |
| TCONS_00044014-exon-sc0004848-1575043694:3520..3688 | TCONS_00044014-exon-sc0004848-1575043694:3520..3688 | Clytia hemisphaerica | exon |
| TCONS_00044014-exon-sc0004848-1510915933:4449..4564 | TCONS_00044014-exon-sc0004848-1510915933:4449..4564 | Clytia hemisphaerica | exon |
| TCONS_00044014-exon-sc0004848-1510915933:4063..4188 | TCONS_00044014-exon-sc0004848-1510915933:4063..4188 | Clytia hemisphaerica | exon |
| TCONS_00044014-exon-sc0004848-1510915933:3520..3688 | TCONS_00044014-exon-sc0004848-1510915933:3520..3688 | Clytia hemisphaerica | exon |
| TCONS_00044014-exon-sc0004848-1491911889:4449..4564 | TCONS_00044014-exon-sc0004848-1491911889:4449..4564 | Clytia hemisphaerica | exon |
| TCONS_00044014-exon-sc0004848-1491911889:4063..4188 | TCONS_00044014-exon-sc0004848-1491911889:4063..4188 | Clytia hemisphaerica | exon |
| TCONS_00044014-exon-sc0004848-1491911889:3520..3688 | TCONS_00044014-exon-sc0004848-1491911889:3520..3688 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004848 | supercontig | sc0004848:3520..4564 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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