TCONS_00044014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044014
Unique NameTCONS_00044014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044014 ID=TCONS_00044014|Name=TCONS_00044014|organism=Clytia hemisphaerica|type=transcript|length=411bp
GGTCAGGCCATGACTTATCAATCGCATCTGGCCATTCCAAAAAGATCTTT
GTTATCAAATTTCATCCCGAAGATCGAAATGTATTCCTGTCTGCAAGCTG
GGACCGAACTGTCAAGATCTGGGATTTGAGAACGGAGTACGCCGTGCGCA
CTATTAATGGTCCTTACGTATGCGGTGACGGTGTAGATCTTTTCCAAGGG
AAAATTGTTAGTGCGTCGTGGAAAGCTCAAGATGCATTGCAGCTTTGGGA
TTACGGTAGTGGTAAGCTGATTTCCACCTTGAGCTGGCCTACAACAAACA
GACGTGGAGAGTATTTGTATTGTGCAAGGTTTTGGGATAACAGCCATGTA
GTGGCTGGTGGAAGTGGAACGAACGATCTGAAAATGATTAATATCACTTC
GAATGAGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00044014-protein

>TCONS_00044014-protein ID=TCONS_00044014-protein|Name=TCONS_00044014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
SGHDLSIASGHSKKIFVIKFHPEDRNVFLSASWDRTVKIWDLRTEYAVRT
INGPYVCGDGVDLFQGKIVSASWKAQDALQLWDYGSGKLISTLSWPTTNR
RGEYLYCARFWDNSHVVAGGSGTNDLKMINITSNEV
Run BLAST on NCBI

transcript from alignment at sc0004848:3520..4564-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044014 ID=TCONS_00044014|Name=TCONS_00044014|organism=Clytia hemisphaerica|type=transcript|length=1045bp|location=Sequence derived from alignment at sc0004848:3520..4564- (Clytia hemisphaerica)
GGTCAGGCCATGACTTATCAATCGCATCTGGCCATTCCAAAAAGATCTTT
GTTATCAAATTTCATCCCGAAGATCGAAATGTATTCCTGTCTGCAAGCTG
GGACCGAACTGTCAAGGTTAGAATTTTTGTGAAGAAATGGAGAATCTGGA
CACAGTATTCCTTGAAACATGTTTTTCTTCTATAGGCATAACATTTATAA
GCATGTACAGGCCAAGTTTTTTCACACCATAACATGATGACATGACGATA
TTAGACGGACTATACAAACTTGTCCCCTTGATTCTGGAAGACTTACTTAA
TTGGACATTATTTTCATGTCCTCGTAACTTTCACTTTTTTACTTCATAAG
ATAGTTTACGATCTTTCTCTCTTTAGATCTGGGATTTGAGAACGGAGTAC
GCCGTGCGCACTATTAATGGTCCTTACGTATGCGGTGACGGTGTAGATCT
TTTCCAAGGGAAAATTGTTAGTGCGTCGTGGAAAGCTCAAGATGCATTGC
AGGTAAATTCTTTATGTTATCCCTTATTGCTTAACCACCAGTACTCACAT
TCTTAACTATTTGTTAATTAGCCACGTAGGTCTATAGAGAAGTATCACTT
TACCTTGATAATAGCCCGAGGATACTAGGTTTACAGGATGTTTTTAGGGG
AATCAGAATTTGCCTATTTTCCGACTCTTAATTGGACTGAGATTTAATTT
TTCTGATTTTTCAAACGCTTACAGGGACTGCCAGGTTTCAAAAAGATACC
CTTAAGGGCGGCACATACACGTACCTTCACTTGCCTAAGTACCCCCCCCC
TGGATAATAGACCCTGTCTATTTCAAACCTTTTATTTGAATCCTAATTTA
ATTGTATTCATACTTTTAATTATCAGCTTTGGGATTACGGTAGTGGTAAG
CTGATTTCCACCTTGAGCTGGCCTACAACAAACAGACGTGGAGAGTATTT
GTATTGTGCAAGGTTTTGGGATAACAGCCATGTAGTGGCTGGTGGAAGTG
GAACGAACGATCTGAAAATGATTAATATCACTTCGAATGAGGTAA

Coding sequence (CDS) from alignment at sc0004848:3520..4564-

>TCONS_00044014 ID=TCONS_00044014|Name=TCONS_00044014|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0004848:3520..4564- (Clytia hemisphaerica)
CTTTGGGATTACGGTAGTGGTAAGCTGATTTCCACCTTGAGCTGGCCTAC
AACAAACAGACGTGGAGAGTATTTGTATTGTGCAAGGTTTTGGGATAACA
GCCATGTAGTGGCTGGTGGAAGTGGAACGAACGATCTGAAAATGATTAAT
ATCACTTCGAATGAGGTAATCTGGGATTTGAGAACGGAGTACGCCGTGCG
CACTATTAATGGTCCTTACGTATGCGGTGACGGTGTAGATCTTTTCCAAG
GGAAAATTGTTAGTGCGTCGTGGAAAGCTCAAGATGCATTGCAGTCAGGC
CATGACTTATCAATCGCATCTGGCCATTCCAAAAAGATCTTTGTTATCAA
ATTTCATCCCGAAGATCGAAATGTATTCCTGTCTGCAAGCTGGGACCGAA
CTGTCAAGCTTTGGGATTACGGTAGTGGTAAGCTGATTTCCACCTTGAGC
TGGCCTACAACAAACAGACGTGGAGAGTATTTGTATTGTGCAAGGTTTTG
GGATAACAGCCATGTAGTGGCTGGTGGAAGTGGAACGAACGATCTGAAAA
TGATTAATATCACTTCGAATGAGGTAATCTGGGATTTGAGAACGGAGTAC
GCCGTGCGCACTATTAATGGTCCTTACGTATGCGGTGACGGTGTAGATCT
TTTCCAAGGGAAAATTGTTAGTGCGTCGTGGAAAGCTCAAGATGCATTGC
AGTCAGGCCATGACTTATCAATCGCATCTGGCCATTCCAAAAAGATCTTT
GTTATCAAATTTCATCCCGAAGATCGAAATGTATTCCTGTCTGCAAGCTG
GGACCGAACTGTCAAGCTTTGGGATTACGGTAGTGGTAAGCTGATTTCCA
CCTTGAGCTGGCCTACAACAAACAGACGTGGAGAGTATTTGTATTGTGCA
AGGTTTTGGGATAACAGCCATGTAGTGGCTGGTGGAAGTGGAACGAACGA
TCTGAAAATGATTAATATCACTTCGAATGAGGTAATCTGGGATTTGAGAA
CGGAGTACGCCGTGCGCACTATTAATGGTCCTTACGTATGCGGTGACGGT
GTAGATCTTTTCCAAGGGAAAATTGTTAGTGCGTCGTGGAAAGCTCAAGA
TGCATTGCAGTCAGGCCATGACTTATCAATCGCATCTGGCCATTCCAAAA
AGATCTTTGTTATCAAATTTCATCCCGAAGATCGAAATGTATTCCTGTCT
GCAAGCTGGGACCGAACTGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027670XLOC_027670Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044014-proteinTCONS_00044014-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044014-exon-sc0004848-1575043694:4449..4564TCONS_00044014-exon-sc0004848-1575043694:4449..4564Clytia hemisphaericaexon
TCONS_00044014-exon-sc0004848-1575043694:4063..4188TCONS_00044014-exon-sc0004848-1575043694:4063..4188Clytia hemisphaericaexon
TCONS_00044014-exon-sc0004848-1575043694:3520..3688TCONS_00044014-exon-sc0004848-1575043694:3520..3688Clytia hemisphaericaexon
TCONS_00044014-exon-sc0004848-1510915933:4449..4564TCONS_00044014-exon-sc0004848-1510915933:4449..4564Clytia hemisphaericaexon
TCONS_00044014-exon-sc0004848-1510915933:4063..4188TCONS_00044014-exon-sc0004848-1510915933:4063..4188Clytia hemisphaericaexon
TCONS_00044014-exon-sc0004848-1510915933:3520..3688TCONS_00044014-exon-sc0004848-1510915933:3520..3688Clytia hemisphaericaexon
TCONS_00044014-exon-sc0004848-1491911889:4449..4564TCONS_00044014-exon-sc0004848-1491911889:4449..4564Clytia hemisphaericaexon
TCONS_00044014-exon-sc0004848-1491911889:4063..4188TCONS_00044014-exon-sc0004848-1491911889:4063..4188Clytia hemisphaericaexon
TCONS_00044014-exon-sc0004848-1491911889:3520..3688TCONS_00044014-exon-sc0004848-1491911889:3520..3688Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004848supercontigsc0004848:3520..4564 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.79809	4.97101	5.58108	2.11306	5.23387	2.59301	6.44148	5.64699	21.1619	16.2661	17.8682	16.0174	1.53706	1.04613	0.670515	0.591967	2.74221	1.15749	3.35611	0.998813	0	1.02526	5.10575	3.15696	23.9259	17.5064	0.689361	0.966687	0.766013	1.74844
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR0110426-blade_b-propeller_TolB-like
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top