TCONS_00044001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044001
Unique NameTCONS_00044001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044001 ID=TCONS_00044001|Name=TCONS_00044001|organism=Clytia hemisphaerica|type=transcript|length=179bp
TCcctataaaaataatctttaacatAACCAGCTCCTAGAGTTACAAAACA
AATTATAATTTGAGAATAAATTGATGAAGATTGAAATAACTTCACTGTCA
TACTTACCtacttataaagaaaatttgaccTCTATATATACTAGGTGTCC
CTACacctaaaataaattttaattgcCTG
Run BLAST on NCBI

transcript from alignment at sc0004831:151..329

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044001 ID=TCONS_00044001|Name=TCONS_00044001|organism=Clytia hemisphaerica|type=transcript|length=179bp|location=Sequence derived from alignment at sc0004831:151..329 (Clytia hemisphaerica)
CAGgcaattaaaatttattttaggtGTAGGGACACCTAGTATATATAGAg
gtcaaattttctttataagtaGGTAAGTATGACAGTGAAGTTATTTCAAT
CTTCATCAATTTATTCTCAAATTATAATTTGTTTTGTAACTCTAGGAGCT
GGTTatgttaaagattatttttataggGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027658XLOC_027658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044001-exon-sc0004831-1491911889:151..329TCONS_00044001-exon-sc0004831-1491911889:151..329Clytia hemisphaericaexon
TCONS_00044001-exon-sc0004831-1510915933:151..329TCONS_00044001-exon-sc0004831-1510915933:151..329Clytia hemisphaericaexon
TCONS_00044001-exon-sc0004831-1575043694:151..329TCONS_00044001-exon-sc0004831-1575043694:151..329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004831supercontigsc0004831:151..329 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top