TCONS_00043994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043994
Unique NameTCONS_00043994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043994 ID=TCONS_00043994|Name=TCONS_00043994|organism=Clytia hemisphaerica|type=transcript|length=789bp
CGAGTTTGGTTTCACTCTTTTCGCTGCTGGAGAACCGAACAACGCCGGGA
ATGAACACTGTGTTTACCAACGAAAAACAGGATATTGGAACGATGCAAAC
TGTGAACTAAAGGTTGGATATGTTTGTAAGAAACCATATTTCAATCCTAA
CGGTGGTGGTAAGAGCTATCGATTCTTTAAAAGACTTTCAACGTGGGATA
TTGCTCAACAACTTTGTGAACAACTTAAAGGAAGTCTAGTAACTATTGAC
TCAGAAGCTGAAAATGAATTTCTCGCTCGAGAGAGTGGAAACAGAGGATT
TAGTGGAACATGGATTGGTTATAATGACAAAGATGTTGAAGGAACCTTTA
AATGGGTGTCTGGCGCAACAACATGCTACAAAAAATGGTTATCAGGGCAG
CCATCGCCATCAGATTGTGTATTTTTGAACCCATTCACCAAGTATTGGAG
TACCTCGACGTGCGGATTTATAAGACCTTATATTtgtgaattcaattttt
aaatctttttttaaagaaaatttgtttaGAGAACGATAAATCCTAACCCT
AATCCTaacaaagaacgacatattaaGCCATCCCAAACCCCGACCATGTG
TTTAaccaggcacgacggaagctttttatatctggtacggcgcatgagga
aatttaagcgattttaccgacgaagaggaaaacttcgggtatttttgtga
aaatctggtacggcggccgccgtacctgccgtacccgttgcgtcgtgcct
ggTTTAACGAATAGTGgtttaaagaacgataaattacgC
Run BLAST on NCBI

protein sequence of TCONS_00043994-protein

>TCONS_00043994-protein ID=TCONS_00043994-protein|Name=TCONS_00043994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
EFGFTLFAAGEPNNAGNEHCVYQRKTGYWNDANCELKVGYVCKKPYFNPN
GGGKSYRFFKRLSTWDIAQQLCEQLKGSLVTIDSEAENEFLARESGNRGF
SGTWIGYNDKDVEGTFKWVSGATTCYKKWLSGQPSPSDCVFLNPFTKYWS
TSTCGFIRPYICEFNF
Run BLAST on NCBI

transcript from alignment at sc0004818:14..1421+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043994 ID=TCONS_00043994|Name=TCONS_00043994|organism=Clytia hemisphaerica|type=transcript|length=1408bp|location=Sequence derived from alignment at sc0004818:14..1421+ (Clytia hemisphaerica)
CGAGTTTGGTTTCACTCTTTTCGCTGCTGGAGAACCGAACAACGCCGGGA
ATGAACACTGTGTTTACCAACGAAAAACAGGATATTGGAACGATGCAAAC
TGTGAACTAAAGGTcagatagtatttattttcaaaattttagtgattttt
gtttaaaaatgagcAGAAATGAATATTGTGTTGCATAGTGTTACAGAATA
ACGGATATTTGTCTTTTGATagaaaaaacgctaaaatttgACAACACTTT
GAACAAGTTTTCTAAGAATAAAACAGGTGAAAACctgactttttttccaa
tcacactgataaaaaatgtttctcctAAAAGATTTGTTCTCTCTGAAAAG
CTACACTTGCCACGACCATACTAGGAAAAACACCGAAGTTTTTTTAGGAA
TCCACACTGAATTTGTGAGCGATAAAAATGCTTAATAAACACAAAacaca
aatgaaacattttctaCTCGAATTCAAATAGGTTGGATATGTTTGTAAGA
AACCATATTTCAATCCTAACGGTGGTGGTAAGAGCTATCGATTCTTTAAA
AGACTTTCAACGTGGGATATTGCTCAACAACTTTGTGAACAACTTAAAGG
AAGTCTAGTAACTATTGACTCAGAAGCTGAAAATGAATTTCTCGCTCGAG
AGAGTGGAAACAGGTAAGTTGATTCACTGTCACAATGTAATGTAAACAGA
GTGGGGGAGCATGGGTGTTCTTGAGCGACTTGTTGATCTTGCGGGATTTT
CTTTGTCACTGACCCCCGCCCGTCatacgccaaattaaattctcgccaaa
attagctttttccctgatccgccaaattaaatttcctacgaaaaaacttt
ttctgctgaattaaattcccgccaaaatttcttcccattTGTACCTTTAC
TTTACTTTTCCAGAGGATTTAGTGGAACATGGATTGGTTATAATGACAAA
GATGTTGAAGGAACCTTTAAATGGGTGTCTGGCGCAACAACATGCTACAA
AAAATGGTTATCAGGGCAGCCATCGCCATCAGATTGTGTATTTTTGAACC
CATTCACCAAGTATTGGAGTACCTCGACGTGCGGATTTATAAGACCTTAT
ATTtgtgaattcaatttttaaatctttttttaaagaaaatttgtttaGAG
AACGATAAATCCTAACCCTAATCCTaacaaagaacgacatattaaGCCAT
CCCAAACCCCGACCATGTGTTTAaccaggcacgacggaagctttttatat
ctggtacggcgcatgaggaaatttaagcgattttaccgacgaagaggaaa
acttcgggtatttttgtgaaaatctggtacggcggccgccgtacctgccg
tacccgttgcgtcgtgcctggTTTAACGAATAGTGgtttaaagaacgata
aattacgC

Coding sequence (CDS) from alignment at sc0004818:14..1421+

>TCONS_00043994 ID=TCONS_00043994|Name=TCONS_00043994|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at sc0004818:14..1421+ (Clytia hemisphaerica)
GAGTTTGGTTTCACTCTTTTCGCTGCTGGAGAACCGAACAACGCCGGGAA
TGAACACTGTGTTTACCAACGAAAAACAGGATATTGGAACGATGCAAACT
GTGAACTAAAGGTTGGATATGTTTGTAAGAAACCATATTTCAATCCTAAC
GGTGGTGGTAAGAGCTATCGATTCTTTAAAAGACTTTCAACGTGGGATAT
TGCTCAACAACTTTGTGAACAACTTAAAGGAAGTCTAGTAACTATTGACT
CAGAAGCTGAAAATGAATTTCTCGCTCGAGAGAGTGGAAACAGAGGATTT
AGTGGAACATGGATTGGTTATAATGACAAAGATGTTGAAGGAACCTTTAA
ATGGGTGTCTGGCGCAACAACATGCTACAAAAAATGGTTATCAGGGCAGC
CATCGCCATCAGATTGTGTATTTTTGAACCCATTCACCAAGTATTGGAGT
ACCTCGACGTGCGGATTTATAAGACCTTATATTtgtgaattcaattttta
aGAGTTTGGTTTCACTCTTTTCGCTGCTGGAGAACCGAACAACGCCGGGA
ATGAACACTGTGTTTACCAACGAAAAACAGGATATTGGAACGATGCAAAC
TGTGAACTAAAGGTTGGATATGTTTGTAAGAAACCATATTTCAATCCTAA
CGGTGGTGGTAAGAGCTATCGATTCTTTAAAAGACTTTCAACGTGGGATA
TTGCTCAACAACTTTGTGAACAACTTAAAGGAAGTCTAGTAACTATTGAC
TCAGAAGCTGAAAATGAATTTCTCGCTCGAGAGAGTGGAAACAGAGGATT
TAGTGGAACATGGATTGGTTATAATGACAAAGATGTTGAAGGAACCTTTA
AATGGGTGTCTGGCGCAACAACATGCTACAAAAAATGGTTATCAGGGCAG
CCATCGCCATCAGATTGTGTATTTTTGAACCCATTCACCAAGTATTGGAG
TACCTCGACGTGCGGATTTATAAGACCTTATATTtgtgaattcaattttt
aaGAGTTTGGTTTCACTCTTTTCGCTGCTGGAGAACCGAACAACGCCGGG
AATGAACACTGTGTTTACCAACGAAAAACAGGATATTGGAACGATGCAAA
CTGTGAACTAAAGGTTGGATATGTTTGTAAGAAACCATATTTCAATCCTA
ACGGTGGTGGTAAGAGCTATCGATTCTTTAAAAGACTTTCAACGTGGGAT
ATTGCTCAACAACTTTGTGAACAACTTAAAGGAAGTCTAGTAACTATTGA
CTCAGAAGCTGAAAATGAATTTCTCGCTCGAGAGAGTGGAAACAGAGGAT
TTAGTGGAACATGGATTGGTTATAATGACAAAGATGTTGAAGGAACCTTT
AAATGGGTGTCTGGCGCAACAACATGCTACAAAAAATGGTTATCAGGGCA
GCCATCGCCATCAGATTGTGTATTTTTGAACCCATTCACCAAGTATTGGA
GTACCTCGACGTGCGGATTTATAAGACCTTATATTtgtgaattcaatttt
taa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027652XLOC_027652Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043994-proteinTCONS_00043994-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043994-exon-sc0004818-1491911889:14..125TCONS_00043994-exon-sc0004818-1491911889:14..125Clytia hemisphaericaexon
TCONS_00043994-exon-sc0004818-1510915933:14..125TCONS_00043994-exon-sc0004818-1510915933:14..125Clytia hemisphaericaexon
TCONS_00043994-exon-sc0004818-1575043694:14..125TCONS_00043994-exon-sc0004818-1575043694:14..125Clytia hemisphaericaexon
TCONS_00043994-exon-sc0004818-1491911889:495..676TCONS_00043994-exon-sc0004818-1491911889:495..676Clytia hemisphaericaexon
TCONS_00043994-exon-sc0004818-1510915933:495..676TCONS_00043994-exon-sc0004818-1510915933:495..676Clytia hemisphaericaexon
TCONS_00043994-exon-sc0004818-1575043694:495..676TCONS_00043994-exon-sc0004818-1575043694:495..676Clytia hemisphaericaexon
TCONS_00043994-exon-sc0004818-1491911889:927..1421TCONS_00043994-exon-sc0004818-1491911889:927..1421Clytia hemisphaericaexon
TCONS_00043994-exon-sc0004818-1510915933:927..1421TCONS_00043994-exon-sc0004818-1510915933:927..1421Clytia hemisphaericaexon
TCONS_00043994-exon-sc0004818-1575043694:927..1421TCONS_00043994-exon-sc0004818-1575043694:927..1421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004818supercontigsc0004818:14..1421 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174357	0.0679511	0.196838	0.207642	5.55271	3.99366	18.1892	26.1808	4.04087	4.63835	2.67752	1.7414	5.43806	7.3811	1.52561	1.33518	3.57611	3.04065	6.39831	12.3617	0.720858	0.301401	0.320326	0.741128	3.27011	2.84946	3.90254	3.26274	1.07462	1.03968
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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