TCONS_00043974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043974
Unique NameTCONS_00043974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043974 ID=TCONS_00043974|Name=TCONS_00043974|organism=Clytia hemisphaerica|type=transcript|length=421bp
TAATTTAGACTAAcaatcttttttctcttttttagaaataagcATATTGA
GAAAGTAACTAAGAATAATAACAGAATGGGGAGAACAGAATATAATCCTG
CATGGGAAGAAAGATTTATTTGGATTACCAAAGATAGTGATGTAACCAAG
GCTCATtgtaaattctgtaaaaagtcATTCAAGATTAACAATAGGGGTGA
AAACCAAGTAAAATCACAGGCAGATAGTGACACCCACAAAAAACATGCTG
GATTgtataaaaaccaaaaaagagTTTCTGGTATATACAGCAAATCTATC
TTCTGGAACCTTTACCCTTTCCAGCCAGGATGAAATCTTAAGAGCAGAGG
CTGTCCACTCTCTATTCTACGTTAATAGAAATATACCTTATTCATGCTCA
ACTGAACAAactgaaattttc
Run BLAST on NCBI

transcript from alignment at sc0004799:335..755

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043974 ID=TCONS_00043974|Name=TCONS_00043974|organism=Clytia hemisphaerica|type=transcript|length=421bp|location=Sequence derived from alignment at sc0004799:335..755 (Clytia hemisphaerica)
gaaaatttcagtTTGTTCAGTTGAGCATGAATAAGGTATATTTCTATTAA
CGTAGAATAGAGAGTGGACAGCCTCTGCTCTTAAGATTTCATCCTGGCTG
GAAAGGGTAAAGGTTCCAGAAGATAGATTTGCTGTATATACCAGAAActc
ttttttggtttttatacAATCCAGCATGTTTTTTGTGGGTGTCACTATCT
GCCTGTGATTTTACTTGGTTTTCACCCCTATTGTTAATCTTGAATgactt
tttacagaatttacaATGAGCCTTGGTTACATCACTATCTTTGGTAATCC
AAATAAATCTTTCTTCCCATGCAGGATTATATTCTGTTCTCCCCATTCTG
TTATTATTCTTAGTTACTTTCTCAATATgcttatttctaaaaaagagaaa
aaagattgTTAGTCTAAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027635XLOC_027635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043974-exon-sc0004799-1491911889:335..755TCONS_00043974-exon-sc0004799-1491911889:335..755Clytia hemisphaericaexon
TCONS_00043974-exon-sc0004799-1510915933:335..755TCONS_00043974-exon-sc0004799-1510915933:335..755Clytia hemisphaericaexon
TCONS_00043974-exon-sc0004799-1575043694:335..755TCONS_00043974-exon-sc0004799-1575043694:335..755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004799supercontigsc0004799:335..755 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.613434	0.263439	1.21837	0.706163	0.624032	0.348377	0	0.477653	0.509302	0.174677	0.508637	0.567895	0	0.231168	0.190051	0.357912	0.552403	0	0	0	0.323603	0.236763	0	0	0	1.55164	0	0.244893	0	0.189243
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top