TCONS_00043968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043968
Unique NameTCONS_00043968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043968 ID=TCONS_00043968|Name=TCONS_00043968|organism=Clytia hemisphaerica|type=transcript|length=596bp
ttctcaaaatacaaaattctgatttttagagtcaaaaataattattccAG
GAAAATTATTTCAGCTACTATTTAGAGAACCTCTCCCCTgtctttaaaca
aaaaaatagaaaacactAATGAAAAATACCCCACTCTTTGCAATttaggc
ccaaatttgcccaaaagtcatcattttttaaatccAGCTCCATCAGTTAT
TAGGCAGTCAGGACCACAgaaatcttatataaaacacaaGATGGAGTTTT
TCCTAACctatttgaagcaaaataattcgCCATTTAagagccaatttttt
ttaagagcaGGGCATTGAGACGCAACGCATCTCCTCTCAAActcaaaaaa
tcataacagtccaaaaaacaataaaatttcagagAAAACCCCAAATATCT
CCTGTTTTAGCCACGCTTtctgtttgattttttctattattcaaaGAAGA
CACCCTCCTCCACATCTACATTAAAAATCTTTCGATTATCTGCTCTCAAA
ACACTAGAATTTGAAGGAGAGTCCAGACCTCATATCTTCTGGAAAACCCA
GAAAAACCGGGAAAAACCCCGATTTTCTCGGTTCACTGGATTTATA
Run BLAST on NCBI

transcript from alignment at sc0004787:3..598

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043968 ID=TCONS_00043968|Name=TCONS_00043968|organism=Clytia hemisphaerica|type=transcript|length=596bp|location=Sequence derived from alignment at sc0004787:3..598 (Clytia hemisphaerica)
TATAAATCCAGTGAACCGAGAAAATCGGGGTTTTTCCCGGTTTTTCTGGG
TTTTCCAGAAGATATGAGGTCTGGACTCTCCTTCAAATTCTAGTGTTTTG
AGAGCAGATAATCGAAAGATTTTTAATGTAGATGTGGAGGAGGGTGTCTT
CtttgaataatagaaaaaatcaaacagaAAGCGTGGCTAAAACAGGAGAT
ATTTGGGGTTTTctctgaaattttattgttttttggactgttatgatttt
ttgagTTTGAGAGGAGATGCGTTGCGTCTCAATGCCCtgctcttaaaaaa
aattggctctTAAATGGcgaattattttgcttcaaatagGTTAGGAAAAA
CTCCATCttgtgttttatataagatttcTGTGGTCCTGACTGCCTAATAA
CTGATGGAGCTggatttaaaaaatgatgacttttgggcaaatttgggcct
aaATTGCAAAGAGTGGGGTATTTTTCATTagtgttttctatttttttgtt
taaagacAGGGGAGAGGTTCTCTAAATAGTAGCTGAAATAATTTTCCTgg
aataattatttttgactctaaaaatcagaattttgtattttgagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027629XLOC_027629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043968-exon-sc0004787-1491911889:3..598TCONS_00043968-exon-sc0004787-1491911889:3..598Clytia hemisphaericaexon
TCONS_00043968-exon-sc0004787-1510915933:3..598TCONS_00043968-exon-sc0004787-1510915933:3..598Clytia hemisphaericaexon
TCONS_00043968-exon-sc0004787-1575043694:3..598TCONS_00043968-exon-sc0004787-1575043694:3..598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004787supercontigsc0004787:3..598 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.256523	0.130348	0	0.458266	0.745747	0.230037	0.272991	0.569115	0.557875	0.344715	0.757967	0.707653	0.60651	0	0.123979	0	0.514731	0.147875	0.302049	0.568907	1.10094	1.22513	0	0.572633	0.128775	0	1.50378	0.813085	1.72959	1.11463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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