TCONS_00043964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043964
Unique NameTCONS_00043964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043964 ID=TCONS_00043964|Name=TCONS_00043964|organism=Clytia hemisphaerica|type=transcript|length=430bp
gtgtGAATAGGATTAAATTTTAAGTGTAATTCCCAATGATATTGATAACA
TTATATGATTGATTTGCCTTTTACAACACAGCTACTGTTACCTAGTGACA
AGATGATTTATCCAGCAAGTTGACTGAGGGAAAGTGATATATGCTGGAAT
AATTTCTTATTCAATAAATTGTTGAGTTCTCCTAAACGACTTTTCATAAG
ACTATTGtccaaagcaaaataaaaacccCTAGAACAGCTGAGTATTTATA
AATTCAGAGGAAAATGTCATTAGCATTTTGTTGTCCCTACTTGATACCCT
ACACTATTCTGGGATGAAATAGATAAAATAAATTATTCTCAAAATTAACt
ttatagcacttttttattttgagaatcCAAAAGCTTTGCATTGAACGGTT
CCGTTATAATAACTTGAAATTATGCAGATT
Run BLAST on NCBI

transcript from alignment at sc0004783:1241..1670

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043964 ID=TCONS_00043964|Name=TCONS_00043964|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at sc0004783:1241..1670 (Clytia hemisphaerica)
AATCTGCATAATTTCAAGTTATTATAACGGAACCGTTCAATGCAAAGCTT
TTGgattctcaaaataaaaaagtgctataaaGTTAATTTTGAGAATAATT
TATTTTATCTATTTCATCCCAGAATAGTGTAGGGTATCAAGTAGGGACAA
CAAAATGCTAATGACATTTTCCTCTGAATTTATAAATACTCAGCTGTTCT
AGgggtttttattttgctttggaCAATAGTCTTATGAAAAGTCGTTTAGG
AGAACTCAACAATTTATTGAATAAGAAATTATTCCAGCATATATCACTTT
CCCTCAGTCAACTTGCTGGATAAATCATCTTGTCACTAGGTAACAGTAGC
TGTGTTGTAAAAGGCAAATCAATCATATAATGTTATCAATATCATTGGGA
ATTACACTTAAAATTTAATCCTATTCacac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027626XLOC_027626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043964-exon-sc0004783-1491911889:1241..1670TCONS_00043964-exon-sc0004783-1491911889:1241..1670Clytia hemisphaericaexon
TCONS_00043964-exon-sc0004783-1510915933:1241..1670TCONS_00043964-exon-sc0004783-1510915933:1241..1670Clytia hemisphaericaexon
TCONS_00043964-exon-sc0004783-1575043694:1241..1670TCONS_00043964-exon-sc0004783-1575043694:1241..1670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004783supercontigsc0004783:1241..1670 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.802664	0.469634	0.54529	0.711309	0.649462	0.513214	0	0	0	0	0.325282	0	0.427061	0	0.0911558	0.293472	0	0	0	0.178573	0	0.681364	0.184064	0	0.517071	0.461473	0	0.23492	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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