|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043951 ID=TCONS_00043951|Name=TCONS_00043951|organism=Clytia hemisphaerica|type=transcript|length=1351bp
TGTTGTTCCATTTTTCCAGGACTTTCTGTTTGATGTTTCTGTCTTTATTG
TTGTGTAGCACCAGTGTTACCATGTGACCCAAGACCGCATCAAATATCTG
TAATCACAACAACCAAACATCCGGTCGGAAGTTCGCCGGACTCCAACACG
TTGAATATTTCAACTGAAGAATTCTTCCCTTTTTCCTTCTTCTGTTATTT
CGATACACACATTCGTGGAGCAAGATTCCCGCACGTCGGTTGTTGCAACT
ACGAGGAAACTTTACAAGTAGAGGCATCCCGAAAACACGACAAACCGGGA
AAACCGATTGCATATCGGGGAACATTGGATAAGAAAGTCCCACCACCTTC
CGCTGAAGCTGTTGAACTCCGAACGGGTGAATGGAAACCGNCGATTGCAT
ATCGGGGAACATTGGATAAGAAAGTCCCACCACCTTCCGCTGAAGCTGTT
GAACTCCGAACGGGCGAATGGAAACCGATTTACGATCGAATCGGAATGGG
ATCGGGAAAACcgacttttgttttgttttggacaAAATGGTGTCGTGCTT
CAATTCGTTTGATGAACTTTTTGACGAAATATGCTGAAGAAAATGGGCAA
GATTTTGCATTTGTCACCTGCTGTACACACAGTGGAGAATCTACGAAAAC
GCACCTCCATAAACTGAACGAGACTTTCGAACAACATGGATGGTCAGATA
TGTCGAGCGTACGCCACTTGTGCGCGTGCGAACAAAATATGGACGCGCAC
CTCATCAGACGACGTTTATCCGTGAACCGGTTTGCGTTGAGTACAACGGC
CGAATTGTTCGGTGTTGTCGGTGTACCTTCAATCATGGTTATCGATAAAG
ACGGTATGATCTCATGGCAAGGACGTTATTGCGCACTGAACTATAACTCC
TTCTCCCTTTTCATGCGACACTTATACAGCACCGTCATGCGTTTACCGTG
CGACGTTCATGATTGCGTCACGTGTTCTGCGGAAGCTCACCAAGACTTTA
AACACACTGAAGATTTACTTCCTTCTCAAGGTGCAGAGTCTACCACCTAC
AAACCCAACTTATTCCCCGCTTTCACACCAAGCGGACGCAGCAAGAAAga
cattaaaaagaaattaaaatccaGACACCGTGGTGCTTCAGATAAAGGCT
CTTCACCGCGGGAGCTGGCGATGAGACACATTGCCATGGCAACCACGCCA
CGCGTGCAAAATCCTTACGAGGAAGAATTCATAGAGGAAATTTTCCTCCC
AAAGGAAACAAAAACGAATAAGGGTTCAGGTAAGGGCGCTAAGAGCGCCC
TATTTCCCTACATTCCTCAATCACCACCCACCCGCCCGAAAAGAATTCGA
A Run BLAST on NCBI protein sequence of TCONS_00043951-protein >TCONS_00043951-protein ID=TCONS_00043951-protein|Name=TCONS_00043951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MGSGKPTFVLFWTKWCRASIRLMNFLTKYAEENGQDFAFVTCCTHSGEST
KTHLHKLNETFEQHGWSDMSSVRHLCACEQNMDAHLIRRRLSVNRFALST
TAELFGVVGVPSIMVIDKDGMISWQGRYCALNYNSFSLFMRHLYSTVMRL
PCDVHDCVTCSAEAHQDFKHTEDLLPSQGAESTTYKPNLFPAFTPSGRSK
KDIKKKLKSRHRGASDKGSSPRELAMRHIAMATTPRVQNPYEEEFIEEIF
LPKETKTNKGSGKGAKSALFPYIPQSPPTRPKRIR Run BLAST on NCBI transcript from alignment at sc0004762:1..5045- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043951 ID=TCONS_00043951|Name=TCONS_00043951|organism=Clytia hemisphaerica|type=transcript|length=5045bp|location=Sequence derived from alignment at sc0004762:1..5045- (Clytia hemisphaerica)
TGTTGTTCCATTTTTCCAGGACTTTCTGTTTGATGTTTCTGTCTTTATTG
TTGTGTAGCACCAGTGGTAGGAAGTTTTTTGTTTCTTTTTGTTTGNTGCT
AGTTCATATCCGTAGATGTTAGAAATGTGCCGGTCGTAGCATTATTTTTA
TAGATTGTTTTAGGTTTGCTTAAAATGTTGTTAAGTTGATTATCCTGAGC
GACTGTGTTGTTCCATTTTTCCAGGACTTTCTGTTTGATGTTTCTGTCTT
TATTGTTGTGTAGCACCAGTGGTAGGAAGTTTTTTGTTTCTTTTTGTTTC
TTGCCGTAGATAAGTTCATATCTTGTTTTGGTCATGGCTTTCTGGATATT
CTGCAAAATGATTTGAAGAGGGTAGCCTCTGGCTAGAAGATTTCTTGAGA
GATTTTTGAGTTCTTTATTAAGGGTACAGTTGTCGCTGATGATGGTGTTG
TAACGAATGGCTTGAGAGTAAACGATACCTTCCTTTACGTGTAGTGGGTG
GTTAGAGTTAAAGTGTAGGATCATTGATCTGTCAGTTGGTTCATCTGTCA
TCTATAAATCTGTGCCATGCCACGATGTTGTCGTTGAATTGGTTTATAAT
TCTTTGCTCAATTTGGTGCATGAAGATATTTGCATATTGCGGGGCATACC
TGCCTCCCATGGATGTACCGCTTATTTGTAAGTAGTGGTCATTTTGGAAT
CGAATGTTACTGTGTTTGAGGATAAATTCTAAGATAATTGTGATGGTTGC
CGTGTTGGGGGCATCTGGTGGTAGGATATGAAGAGATTCTTTGTAGTATT
TGGAAATTGTTGCTATACCTTCTTCATGGGGGATATTTGTATATAATGAT
GATACGTCGGCTGTAACCATGATCATTTCTGAATGAGGGAGGATGATATT
GTCTAGGATTTGTAGCATGTGTTTAGTGTCTTTGATTTAGGTTGGGAGGT
TTTCTACTATTGGTTGAAGATGGTGAGCGATGAATCTCGATAAATTATCT
GTGGGGCTGTCGAAACCAGAGACGCAAGGACGTAATGGTGTTAAAGGTTT
ATGAACTTTTGGAAGGCCATAGAAGATAGGAGTACGTGGTTCGTGTAGTG
GAAGGAGGTATTTTTGGATGTTGTGGTCGATGTAGTGTTTCTTGTATAAA
TAATCGATCATGGATCTGACATCGTGGGTGATGTGAGGAGTTGGATCAAA
ATCTAGTTTTTTATAGACGTCTGAGTTTAAATGTTCTATGTAGATTTTAT
TAATGTAGTCTTGACGGTCAAGGAGAACAATCCCACCACTATTATCGGCT
TTCTTTATGATCAGATCGTTATTGTTTTTTAGAGATAGAAAGGCTTCCAA
GAAATACTGGTGATCTTTGTTGCTTGCCTTCTGTGTTGGGGGTAGGATTT
GAGTGTTTTCGAGCTGATTGAAGAATTCTTCTAAGGTAGCGTTATCATTG
GGTGGTGGGTTCCAGTCGATTTGAGTTTTTTTGGGAAGTTTTTTTGATGT
TTGGTTTGGGTTTTGGTGTTGTAAATTTGTTTCGTTGTTGTTGTTTTTAT
CGTGAAAGTAAAGTTTGAGGTTGACTCTTCTTTTTAGGGTGGCGATAACT
TGTTGAGGGACGGATTTCCTTTTGAAAAAGGTATCTTCGGGGAGTAATTT
AGTCCTTTTGTCAGTACGTTTTTTTCTCCTTCCGTGAGGATATGGGTAGA
GAAGTTGTGGATAAGGTTTTGGTTGAATGTGTTGGTGTGTTGTTTGATGA
TTGTTTTACGACGGGTGTTTTCGGGAAGTTTGTTTTGATGCCAGAGTTTT
GAATTGGGGAGTAGATCATGTAGTGAAGGTTTCTTGTATGATCTTTTAGC
ATCAGGTATTGGTTTCATGTTGAGCTGAAGCTAGTGAAAAGAATGTGTAA
TATGAATTTGTGAGTGGATGGTATTTGCAAAGATGGTATCCAGTAGGCGT
GAACCAGTGCAATGAATAGAAAATGAATAGAGTGCTTTAGTTGATGTATA
GTAGTACGACTTAAAATGTACTTAGTTCCAAACTTAGGTCCACACTTATC
AATACCAACTTATCATGTAGAGTATTCCGGATAGAGATTAAGAATGGATT
CTCATTCAGAATTTGGAATATAAAGATCCTTTCTGAAGTGGGTACGAGTA
TGCACAATGAGATGAAAAGGGGATAAAGAAACTTTTTGGAATAAAAGATA
ATGAGGAATACAATAGCTTTTGGAAATAATGAGAATGTATTTTTAGTGAA
CATCTATAAAACTAATTAGTATAATGCATATTAACATGGTGAAAATAGAA
ATTTGTGAGTGTGGTGGTTTGATTTATAGTAAATGTGACGGGGTGACGAG
GATGTGGCGTTCAGCAGCGTTCGCATAACGTTTGATGAATCTTCGAATGT
TAGGTGGATTTGGTGGTAATGGTCTTGTTGGTGGTAGTTGTTGTGGTTGT
GGTTGTGGTTATGATACTTGTTTTTTCTTGGAGTTTCGGCATATTCAATT
CGAAAATTTCATCGTCCGTGATTGTGAAATCGAATTCTTATGAAGCGGAC
ATCTGAGGAGATAAAAATTGATTTAAAGGATTGTGTTGGTTCCTACCAAG
TTGGTACATTGAGGCAGTTTTTTTGTAGTATAGAGTGGCAGAGAGAGATA
GAGAGAGTGAGAGAGAGAGGTAGAAGAGGAATGATTTAGGAACAAAAGAG
AGTTTTCTCTCAGAGATAAGAGTCAAGAATACTTTGTAATTCTGAAGTAT
TGGTTTAGAGTGTATGAAGAAATTTCTACTTCTATTACTTGAAACATGCA
CAGTAAAAGAATAAAGGAATCCAGTCGTTACATGCATTGTTGCAAATATG
CAAAATTCACTATGGTCTAACGATATAGAATCTTCAATGAAAAAAATTAA
CTTTCTTTCGAAATTTGTGAAATTTTGTACCTAATTTCATGAATGTCTAT
GTCGTTTTCTTCAGTTACCATGTGACCCAAGACCGCATCAAATATCTGTA
ATCACAACAACCAAACATCCGGTCGGAAGTTCGCCGGACTCCAACACGTT
GAATATTTCAACTGAAGAATTCTTCCCTTTTTCCTTCTTCTGTTATTTCG
ATACACACATTCGTGGAGCAAGGTATATTTAATTGTTCTCAATCTCGGCC
CCAATCTCATTTGTCACTTTAGTTTTTTATTTGAAGTTAATCGTTGCATT
CATTTAGTTTGCTCTCAACCGTATTTCGTCGTTTTTGATTGATCACTTCA
GAGAATGAAGAATCTTTGAAAGAACAGCCAAAACATTTTTAAATCTAAAA
TCTTGATAATTTAATGTAGTAGTATCAAAATTTCTTTTACGCCAGTGGTG
AAAAAATCTGCACTTTTCGCAAAGACCGACTTTATAATTTAAGTGTTGCA
GCCCGAAAAGTTGGGTGCTTTTTCTGTAGTATTTATTTATCATATACAAA
ACTGCTTCATATTTTATATTTCAGATTCCCGCACGTCGGTTGTTGCAACT
ACGAGGAAACTTTACAAGTAGAGGCATCCCGAAAACACGACAAACCGGGA
AAACCGATTGCATATCGGGGAACATTGGATAAGAAAGTCCCACCACCTTC
CGCTGAAGCTGTTGAACTCCGAACGGGTGAATGGAAACCGNCGATTGCAT
ATCGGGGAACATTGGATAAGAAAGTCCCACCACCTTCCGCTGAAGCTGTT
GAACTCCGAACGGGCGAATGGAAACCGATTTACGATCGAATCGGAATGGG
ATCGGGAAAACCGACTTTTGTTTTGTTTTGGACAAAATGGTGTCGTGCTT
CAATTCGTTTGATGAACTTTTTGACGAAATATGCTGAAGAAAATGGGCAA
GATGTAAGAAGGATATTGTCTCCTCTGTCCCTCATATTTTTATCTACCAC
CTTATCTGTAAAAATCACTATGTGCCAGAGTGTACCTGGCGTTTATCCCT
TGCTGTTCAAATAAGTAAATATTGTTTGTTTTGATAGTTATATGTGTGCA
GAATTGTAGTGTTTCAGAAAAATCAAAAAAAGCAACAAAAAAAAACAAAC
ATATCATTAAAACTTTTATCAATAAAATAAAATTTACTTGACCGTTATTA
TCTCCTTTATCTACAGTTTGCATTTGTCACCTGCTGTACACACAGTGGAG
AATCTACGAAAACGCACCTCCATAAACTGAACGAGACTTTCGAACAACAT
GGATGGTCAGATATGTCGAGCGTACGCCACTTGTGCGCGTGCGAACAAAA
TATGGACGCGCACCTCATCAGACGACGTTTATCCGTGAACCGGTTTGCGT
TGAGTACAACGGCCGAATTGTTCGGTGTTGTCGGTGTACCTTCAATCATG
GTTATCGATAAAGACGGTACGTTTTCGTCTCACTTTGGGGTTGTATCATC
ATTTGACAAGATCGTACAGAGTATTCCCAACTTATGCAGCGAAAGTTACA
CCAAATCTTTTATGAAATATTCATGAAAGCATAAACCTTGCTTTACTTTT
GAAACTCTCAATAATAATTCTGTTAAATTTTTTTTCATCTTTCTCAGGTA
TGATCTCATGGCAAGGACGTTATTGCGCACTGAACTATAACTCCTTCTCC
CTTTTCATGCGACACTTATACAGCACCGTCATGCGTTTACCGTGCGACGT
TCATGATTGCGTCACGTGTTCTGCGGAAGCTCACCAAGACTTTAAACACA
CTGAAGATTTACTTCCTTCTCAAGGTGCAGAGTCTACCACCTACAAACCC
AACTTATTCCCCGCTTTCACACCAAGCGGACGCAGCAAGAAAGACATTAA
AAAGAAATTAAAATCCAGACACCGTGGTGCTTCAGATAAAGGCTCTTCAC
CGCGGGAGCTGGCGATGAGACACATTGCCATGGCAACCACGCCACGCGTG
CAAAATCCTTACGAGGAAGAATTCATAGAGGAAATTTTCCTCCCAAAGGA
AACAAAAACGAATAAGGGTTCAGGTAAGGGCGCTAAGAGCGCCCTATTTC
CCTACATTCCTCAATCACCACCCACCCGCCCGAAAAGAATTCGAA Coding sequence (CDS) from alignment at sc0004762:1..5045- >TCONS_00043951 ID=TCONS_00043951|Name=TCONS_00043951|organism=Clytia hemisphaerica|type=CDS|length=2565bp|location=Sequence derived from alignment at sc0004762:1..5045- (Clytia hemisphaerica)
GTATGATCTCATGGCAAGGACGTTATTGCGCACTGAACTATAACTCCTTC
TCCCTTTTCATGCGACACTTATACAGCACCGTCATGCGTTTACCGTGCGA
CGTTCATGATTGCGTCACGTGTTCTGCGGAAGCTCACCAAGACTTTAAAC
ACACTGAAGATTTACTTCCTTCTCAAGGTGCAGAGTCTACCACCTACAAA
CCCAACTTATTCCCCGCTTTCACACCAAGCGGACGCAGCAAGAAAGACAT
TAAAAAGAAATTAAAATCCAGACACCGTGGTGCTTCAGATAAAGGCTCTT
CACCGCGGGAGCTGGCGATGAGACACATTGCCATGGCAACCACGCCACGC
GTGCAAAATCCTTACGAGGAAGAATTCATAGAGGAAATTTTCCTCCCAAA
GGAAACAAAAACGAATAAGGGTTCAGGTAAGGGCGCTAAGAGCGCCCTAT
TTCCCTACATTCCTCAATCACCACCCACCCGCCCGAAAAGAATTCGATTT
GCATTTGTCACCTGCTGTACACACAGTGGAGAATCTACGAAAACGCACCT
CCATAAACTGAACGAGACTTTCGAACAACATGGATGGTCAGATATGTCGA
GCGTACGCCACTTGTGCGCGTGCGAACAAAATATGGACGCGCACCTCATC
AGACGACGTTTATCCGTGAACCGGTTTGCGTTGAGTACAACGGCCGAATT
GTTCGGTGTTGTCGGTGTACCTTCAATCATGGTTATCGATAAAGACGATG
GGATCGGGAAAACCGACTTTTGTTTTGTTTTGGACAAAATGGTGTCGTGC
TTCAATTCGTTTGATGAACTTTTTGACGAAATATGCTGAAGAAAATGGGC
AAGATGTATGATCTCATGGCAAGGACGTTATTGCGCACTGAACTATAACT
CCTTCTCCCTTTTCATGCGACACTTATACAGCACCGTCATGCGTTTACCG
TGCGACGTTCATGATTGCGTCACGTGTTCTGCGGAAGCTCACCAAGACTT
TAAACACACTGAAGATTTACTTCCTTCTCAAGGTGCAGAGTCTACCACCT
ACAAACCCAACTTATTCCCCGCTTTCACACCAAGCGGACGCAGCAAGAAA
GACATTAAAAAGAAATTAAAATCCAGACACCGTGGTGCTTCAGATAAAGG
CTCTTCACCGCGGGAGCTGGCGATGAGACACATTGCCATGGCAACCACGC
CACGCGTGCAAAATCCTTACGAGGAAGAATTCATAGAGGAAATTTTCCTC
CCAAAGGAAACAAAAACGAATAAGGGTTCAGGTAAGGGCGCTAAGAGCGC
CCTATTTCCCTACATTCCTCAATCACCACCCACCCGCCCGAAAAGAATTC
GATTTGCATTTGTCACCTGCTGTACACACAGTGGAGAATCTACGAAAACG
CACCTCCATAAACTGAACGAGACTTTCGAACAACATGGATGGTCAGATAT
GTCGAGCGTACGCCACTTGTGCGCGTGCGAACAAAATATGGACGCGCACC
TCATCAGACGACGTTTATCCGTGAACCGGTTTGCGTTGAGTACAACGGCC
GAATTGTTCGGTGTTGTCGGTGTACCTTCAATCATGGTTATCGATAAAGA
CGATGGGATCGGGAAAACCGACTTTTGTTTTGTTTTGGACAAAATGGTGT
CGTGCTTCAATTCGTTTGATGAACTTTTTGACGAAATATGCTGAAGAAAA
TGGGCAAGATGTATGATCTCATGGCAAGGACGTTATTGCGCACTGAACTA
TAACTCCTTCTCCCTTTTCATGCGACACTTATACAGCACCGTCATGCGTT
TACCGTGCGACGTTCATGATTGCGTCACGTGTTCTGCGGAAGCTCACCAA
GACTTTAAACACACTGAAGATTTACTTCCTTCTCAAGGTGCAGAGTCTAC
CACCTACAAACCCAACTTATTCCCCGCTTTCACACCAAGCGGACGCAGCA
AGAAAGACATTAAAAAGAAATTAAAATCCAGACACCGTGGTGCTTCAGAT
AAAGGCTCTTCACCGCGGGAGCTGGCGATGAGACACATTGCCATGGCAAC
CACGCCACGCGTGCAAAATCCTTACGAGGAAGAATTCATAGAGGAAATTT
TCCTCCCAAAGGAAACAAAAACGAATAAGGGTTCAGGTAAGGGCGCTAAG
AGCGCCCTATTTCCCTACATTCCTCAATCACCACCCACCCGCCCGAAAAG
AATTCGATTTGCATTTGTCACCTGCTGTACACACAGTGGAGAATCTACGA
AAACGCACCTCCATAAACTGAACGAGACTTTCGAACAACATGGATGGTCA
GATATGTCGAGCGTACGCCACTTGTGCGCGTGCGAACAAAATATGGACGC
GCACCTCATCAGACGACGTTTATCCGTGAACCGGTTTGCGTTGAGTACAA
CGGCCGAATTGTTCGGTGTTGTCGGTGTACCTTCAATCATGGTTATCGAT
AAAGACGATGGGATCGGGAAAACCGACTTTTGTTTTGTTTTGGACAAAAT
GGTGTCGTGCTTCAATTCGTTTGATGAACTTTTTGACGAAATATGCTGAA
GAAAATGGGCAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043951-exon-sc0004762-1575043694:4980..5045 | TCONS_00043951-exon-sc0004762-1575043694:4980..5045 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1575043694:1924..2081 | TCONS_00043951-exon-sc0004762-1575043694:1924..2081 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1575043694:1193..1571 | TCONS_00043951-exon-sc0004762-1575043694:1193..1571 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1575043694:680..929 | TCONS_00043951-exon-sc0004762-1575043694:680..929 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1575043694:1..498 | TCONS_00043951-exon-sc0004762-1575043694:1..498 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1510915933:4980..5045 | TCONS_00043951-exon-sc0004762-1510915933:4980..5045 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1510915933:1924..2081 | TCONS_00043951-exon-sc0004762-1510915933:1924..2081 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1510915933:1193..1571 | TCONS_00043951-exon-sc0004762-1510915933:1193..1571 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1510915933:680..929 | TCONS_00043951-exon-sc0004762-1510915933:680..929 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1510915933:1..498 | TCONS_00043951-exon-sc0004762-1510915933:1..498 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1491911889:4980..5045 | TCONS_00043951-exon-sc0004762-1491911889:4980..5045 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1491911889:1924..2081 | TCONS_00043951-exon-sc0004762-1491911889:1924..2081 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1491911889:1193..1571 | TCONS_00043951-exon-sc0004762-1491911889:1193..1571 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1491911889:680..929 | TCONS_00043951-exon-sc0004762-1491911889:680..929 | Clytia hemisphaerica | exon |
| TCONS_00043951-exon-sc0004762-1491911889:1..498 | TCONS_00043951-exon-sc0004762-1491911889:1..498 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004762 | supercontig | sc0004762:1..5045 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012336 | Thioredoxin-like_fold |
Blast
The following BLAST results are available for this feature:
|
