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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043948 ID=TCONS_00043948|Name=TCONS_00043948|organism=Clytia hemisphaerica|type=transcript|length=1150bp
ATTTAAGATACCTTCGCCAATCTTGGGAATCTccatttttcgatatttta
ttaGCGCTTTTCGTGACGATTACTCTCATATAAATCTTATCACCACCAGG
ATTGGAGAAGTTTGTGAAGTTGAAGCACACGAAGAATTGACTTTTTCAAT
CATCTGCGGTGGAGCTCAAGTTATCTGAAATTGGAATCGTCTAAAACACG
ATGCGCAATGGATTATAACGAACGATGATTGTTTATTTTAAAGTCGTTAA
AAGTGCGAAGTAATTATCTTGGGAATAAATGAActgaaaatcaattaaaa
caatgtaacaaaaaagTTACAGAATTATGTCAATTATGAACGACAGtcat
tttcatttttatgggAACACAATTGCAATATCATTTATCCAGATGAGACg
tgtattttccacattttccacTGTCGTAATATCATAATGATACACATTCG
TTGGCGAAGGCAAGAATCTGGAAACCTTCTGGAGAATACCTATGTGTCAG
AGATccggtgaaattttcatccacactgaaggaaaaagctccaccgggTC
GGCATTGAGACAGTGGTGCGTGTGCATGAGAGAATGAAAAGAACGcccag
aaagaaaagaaagaccaaCGAAGTTACAGTCTCTATTCTATTATAACTTG
ATTGTAATGATCAGTGacctcatttttaattttcgccactttttttaatg
ttttatgtaTTTCGTAACGTATGTTATTATGAATTcttaaatttaataaa
aaaggtggttcttattttcttcttcacgacTCTCAAGCAGCACGCTCTCC
CTGAACAGCTAATAATGGTAACAATCGGTaactaaataaagaagaaaaag
tatTATCATTCATATGACTGTTAGAAGATCAATGGTACTGTAgatttttt
aagcttgaaaCTATATAGACAAATTGACAGTCGCTCAAAAGTCGGCAGAT
AAACTGCCGAAGTTACGGTGACAAGAAACAACGCACACTAATTGATGAGA
AGCacaaaaaacaagctagatTTCAACATAGATGAGATTATATGTTTCAT
ACATATAACAATGTAACTTACACTGTCTCGGACACTTCTTGAGTTTAGTG
AAAGCAGTCCGCAATGATTGTGATATTGACAAATCGTCTCCGCTTCATTN Run BLAST on NCBI transcript from alignment at sc0004758:3442..5425- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043948 ID=TCONS_00043948|Name=TCONS_00043948|organism=Clytia hemisphaerica|type=transcript|length=1984bp|location=Sequence derived from alignment at sc0004758:3442..5425- (Clytia hemisphaerica)
ATTTAAGATACCTTCGCCAATCTTGGGAATCTCCATTTTTCGATATTTTA
TTAGCGCTTTTCGTGACGATTACTCTCATATAAATCTTATCACCACCAGG
ATTGGAGAAGTTTGTGAAGTTGAAGCACACGAAGAATTGACTTTTTCAAT
CATCTGCGGTGGAGCTCAAGTTATCTGAAATTGGAATCGTCTAAAACACG
ATGCGCAATGGATTATAACGAACGATGATTGTTTATTTTAAAGTCGTTAA
AAGTGCGAAGTAATTATCTTGGGAATAAATGAACTGAAAATCAATTAAAA
CAATGTAACAAAAAAGTTACAGAATTATGTCAATTATGAACGACAGGTGA
GACTTTTATTTATGGCTTTTATTCGCCAATACGATGACATGGTTTTTGGC
TAATTTTACGAAAAGAAACACACCCCTGTCTCACATGTCACGCATGTCTG
TTAAAGAGTTTTTATGAATACGGGAAGATTGGGGAAACGGTACATTATAT
TGTCTCTCAGTCCACCGGGACAAGGGGTGAAACTTTCCACCTTTTAGCGA
GTTTAGTTCGATTTTCCTTTGAGTTCAAGCTGCAAAAACATCTTTATAAT
GTTTCGATGTTTTTCCATTCGATGTAATTTTTACTAGAAAGGACATGAGA
ATTTCGGTACGGTTTGCCTTTTAATTACCTTAAATTTCCATTTGATGAGA
TAGGGATATGAAGGCCAAGTAGAAATAAAGAGCATTGAGAAATGGGAACT
TTCATCGGGTAAAATTTTGACAGGCTCGGAGATGCTTCGGTCGAGGGCTT
GAAAAAGCTGAAAGATGCTTATAACGATACTAACGGTGTATTTTACTTTT
TTCATAGTCCTCCTGGTAGGTTTCAAAACTTCACCGAGACAGGGGTGTAT
AAATCTTACATTTTACTTTAAGGAGACGGGGCTGTATAAATGTTAACTTT
TCCCAGTTTTACAGATGTTTTTTTCTGTCTATAAACTTTCGCGAATGGCC
CTTAAAAGAATTTTCAAAAAATGCTGTGGCGAAGGAATAGAATACGGGCA
TTGTGAGATAACGATGTTTCAGAACCCTGATTTTGCCACTCCATGCTTAT
TACTAGGTGTCCAGTGGTCTAGATTGGATGAATCACAACAATTCTTTTGT
GCTATTTTCTTTTTTTCTTTTTCATTTCAGTCATTTTCATTTTTATGGGA
ACACAATTGCAATATCATTTATCCAGATGAGACGTGTATTTTCCACATTT
TCCACTGTCGTAATATCATAATGATACACATTCGTTGGCGAAGGCAAGAA
TCTGGAAACCTTCTGGAGAATACCTATGTGTCAGAGATCCGGTGAAATTT
TCATCCACACTGAAGGAAAAAGCTCCACCGGGTCGGCATTGAGACAGTGG
TGCGTGTGCATGAGAGAATGAAAAGAACGCCCAGAAAGAAAAGAAAGACC
AACGAAGTTACAGTCTCTATTCTATTATAACTTGATTGTAATGATCAGTG
ACCTCATTTTTAATTTTCGCCACTTTTTTTAATGTTTTATGTATTTCGTA
ACGTATGTTATTATGAATTCTTAAATTTAATAAAAAAGGTGGTTCTTATT
TTCTTCTTCACGACTCTCAAGCAGCACGCTCTCCCTGAACAGCTAATAAT
GGTAACAATCGGTAACTAAATAAAGAAGAAAAAGTATTATCATTCATATG
ACTGTTAGAAGATCAATGGTACTGTAGATTTTTTAAGCTTGAAACTATAT
AGACAAATTGACAGTCGCTCAAAAGTCGGCAGATAAACTGCCGAAGTTAC
GGTGACAAGAAACAACGCACACTAATTGATGAGAAGCACAAAAAACAAGC
TAGATTTCAACATAGATGAGATTATATGTTTCATACATATAACAATGTAA
CTTACACTGTCTCGGACACTTCTTGAGTTTAGTGAAAGCAGTCCGCAATG
ATTGTGATATTGACAAATCGTCTCCGCTTCATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043948-exon-sc0004758-1575043694:5080..5425 | TCONS_00043948-exon-sc0004758-1575043694:5080..5425 | Clytia hemisphaerica | exon |
| TCONS_00043948-exon-sc0004758-1575043694:3442..4245 | TCONS_00043948-exon-sc0004758-1575043694:3442..4245 | Clytia hemisphaerica | exon |
| TCONS_00043948-exon-sc0004758-1510915933:5080..5425 | TCONS_00043948-exon-sc0004758-1510915933:5080..5425 | Clytia hemisphaerica | exon |
| TCONS_00043948-exon-sc0004758-1510915933:3442..4245 | TCONS_00043948-exon-sc0004758-1510915933:3442..4245 | Clytia hemisphaerica | exon |
| TCONS_00043948-exon-sc0004758-1491911889:5080..5425 | TCONS_00043948-exon-sc0004758-1491911889:5080..5425 | Clytia hemisphaerica | exon |
| TCONS_00043948-exon-sc0004758-1491911889:3442..4245 | TCONS_00043948-exon-sc0004758-1491911889:3442..4245 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004758 | supercontig | sc0004758:3442..5425 - |
Blast
The following BLAST results are available for this feature:
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