TCONS_00043944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043944
Unique NameTCONS_00043944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043944 ID=TCONS_00043944|Name=TCONS_00043944|organism=Clytia hemisphaerica|type=transcript|length=355bp
gttaatttcgcgaaaaatgaaACTTCTCCTAAAAATCGCGtaagtttttt
ccaagttttaaaagccgaaaaatctaaataaaacgAGGACTCGGGGAAAG
GCCGGGAGAGGGTAAGAATAATTTCGTCCTAGCTATAAGGGGATGTAGAT
TCTCAAGGCAGTTAATAAAAGACAggatttttaaaaatgcttcgatagct
tattttttgtattttctataaTGATTTACTCGATAGTGATACAATTTCCT
TGCTCTTTTGCCTTCTTTTTACCACCTGAGGACATTTCACGAATATCTCT
GCTTCCATTTCCAGCTTCTTCATTCgacttttcttccttttctttttctc
gaatc
Run BLAST on NCBI

transcript from alignment at sc0004756:5225..5579

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043944 ID=TCONS_00043944|Name=TCONS_00043944|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0004756:5225..5579 (Clytia hemisphaerica)
gattcgagaaaaagaaaaggaagaaaagtcGAATGAAGAAGCTGGAAATG
GAAGCAGAGATATTCGTGAAATGTCCTCAGGTGGTAAAAAGAAGGCAAAA
GAGCAAGGAAATTGTATCACTATCGAGTAAATCAttatagaaaatacaaa
aaataagctatcgaagcatttttaaaaatccTGTCTTTTATTAACTGCCT
TGAGAATCTACATCCCCTTATAGCTAGGACGAAATTATTCTTACCCTCTC
CCGGCCTTTCCCCGAGTCCTcgttttatttagatttttcggcttttaaaa
cttggaaaaaacttaCGCGATTTTTAGGAGAAGTttcatttttcgcgaaa
ttaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027608XLOC_027608Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043944-exon-sc0004756-1491911889:5225..5579TCONS_00043944-exon-sc0004756-1491911889:5225..5579Clytia hemisphaericaexon
TCONS_00043944-exon-sc0004756-1510915933:5225..5579TCONS_00043944-exon-sc0004756-1510915933:5225..5579Clytia hemisphaericaexon
TCONS_00043944-exon-sc0004756-1575043694:5225..5579TCONS_00043944-exon-sc0004756-1575043694:5225..5579Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004756supercontigsc0004756:5225..5579 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.886376	1.97524	0.37356	2.51497	0	0	0.312412	0.292477	0.614309	0	0	0.401003	0.211339	1.2351	1.19571	0.629015	0.182418	0	0	0	0.360639	0	2.45214	1.37392	1.14107	0.37688	0	1.10471	2.28271	1.73991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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