|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043936 ID=TCONS_00043936|Name=TCONS_00043936|organism=Clytia hemisphaerica|type=transcript|length=381bp
CccaattttcagcatttttcaaCTTCTTTGGCCAAACTTTAcctttaaaa
atgtaaaaatagcAGTTGAGTAACCAACATGTTACCAATATTTCCAATTT
AGAAATCACTAAATgcctttttgcaaaaatttatgCATGCTTATGTAGTT
gaaatgttcaaaaaagatgTTTTCATTCAGGTGGCCGATTAATCTGGCTT
TTGGCAATTTGACCAGGCCTATCAGTGAATAGGAATGAATATTTGTTTAT
TCTATGAATGCTCTAGCACTGGCACAAAAATATTGGTATTTTGAACAGTG
ACTCTAGCTTCAACTCAAttcattaaaattcaaaatatttattggaCAGC
CTAATCTTAGCttggaaagataaaaaaaact Run BLAST on NCBI transcript from alignment at sc0004748:3709..5337- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043936 ID=TCONS_00043936|Name=TCONS_00043936|organism=Clytia hemisphaerica|type=transcript|length=1629bp|location=Sequence derived from alignment at sc0004748:3709..5337- (Clytia hemisphaerica)
CCCAATTTTCAGCATTTTTCAACTTCTTTGGCCAAACTTTACCTTTAAAA
ATGTAAAAATAGCAGTTGAGTAACCAACATGTTACCAATATTTCCAATTT
AGAAATCACTAAATGCCTTTTTGCAAAAATTTATGCATGCTTATGTAGTT
GAAATGTTCAAAAAAGATGTTTTCATTCAGGTGGCCGATTAATCTGGCTT
TTGGCAATTTGACCAGGCCTATCAGTGAATAGGAATGAATATTTGTTTAT
TCTATGAATGCTCTAGCACTGGCATAAAAAGATTGGTATTTTATACAGTG
ACTCTAGCTTCAACTCAATTCATTAAAATTCAAAATATTTATTGGACAGC
CTAATCTTTGCTTGGAAAGATTAAAAAAAATTCTTTATTTTCTGGGTCAT
CTGCAAACGACGGAGGGTCACTTTCAAGAGTTTTTTTTATAATGACATTT
GAAAATGCACATTAAATCAAGAGAGACATATGCACGCTTTCTGTTTATAA
GAATGGTGTAAATCCATTACATAGATATTTTTAACTTTTTTAGGAAAATC
ATCCTAAAATATTCTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTTACAGCACTCTTAGGTTAGGA
TCCTAATTCAGACTAGATTTAACATTTAGTACATACGTCTCAAGCATAAA
ATGGCATTTTTGTGAAAAAAGTGAGCCATACTTGGCGTCTTCGGGGTAAT
TGACAAATTATTATCGAGAATGCTCTAAAAATGGCATTCTTAGCTTGAGT
AGCAAAATTCCATGATGGCAATATTCTTAGCATTATTCTTAGTTTTTTTG
GCCATTTTCATCATGGACATTCTTATAAAAAAGCGTGTAGTCACTTCAGG
AAACACTGAATACTAGAGCAGCTAGAATTAAGTATGGGTTTAATGACTAA
AACAAAATAAAATTAGTGCACATTTCAAGCATACACTGCAAGTATACCTC
AATATATCAACACATCTACTTTTTGGAAGTAATTTAACCTTTGATCATTT
TAAATACCCAACTAACCCATCAACTTCAAAAAACAATTGAAATGTAAATG
GTTAATCTCAGATATTGTTTTCATTCAGGTGGCCGATTAATCTGGCTTTT
GGCAATTTGACCAGGCCTATCAGTGAATAGGAATGAAGATTTGTTTGATC
TATGAATGCTCTAGCACTGACACAAAAATATTGGTATTTTGAACAGTGAC
TCTAGCTTCAACTCAATTCATTAAAATTCAAAATATTTATTGGACAGCCT
AATCTTAGCTTGGAAAGATAAAAAAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043936-exon-sc0004748-1575043694:5065..5337 | TCONS_00043936-exon-sc0004748-1575043694:5065..5337 | Clytia hemisphaerica | exon |
| TCONS_00043936-exon-sc0004748-1575043694:3709..3816 | TCONS_00043936-exon-sc0004748-1575043694:3709..3816 | Clytia hemisphaerica | exon |
| TCONS_00043936-exon-sc0004748-1510915933:5065..5337 | TCONS_00043936-exon-sc0004748-1510915933:5065..5337 | Clytia hemisphaerica | exon |
| TCONS_00043936-exon-sc0004748-1510915933:3709..3816 | TCONS_00043936-exon-sc0004748-1510915933:3709..3816 | Clytia hemisphaerica | exon |
| TCONS_00043936-exon-sc0004748-1491911889:5065..5337 | TCONS_00043936-exon-sc0004748-1491911889:5065..5337 | Clytia hemisphaerica | exon |
| TCONS_00043936-exon-sc0004748-1491911889:3709..3816 | TCONS_00043936-exon-sc0004748-1491911889:3709..3816 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004748 | supercontig | sc0004748:3709..5337 - |
Blast
The following BLAST results are available for this feature:
|
