TCONS_00043925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043925
Unique NameTCONS_00043925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043925 ID=TCONS_00043925|Name=TCONS_00043925|organism=Clytia hemisphaerica|type=transcript|length=801bp
aaaatcctaacaagacgactagaagtcgaaaatttcgccttaaataagac
aagaaagaaaagaacaatGAAATCCTTAGAGAACAATACacacaattaaa
acttgaaaatgaatACGGGAAATTCATGAGATTTGATGAGTTAAGGACGA
AAGGCAAGGTAAAATTTTACGTCTTTCTGGTCGAAAATATCCGATATTTT
GAATTCTAAAAGacaagattcgagattccaagCAAtccaaaagaaagttt
ttttttcattctagcCGAAAATCTGCTTTCGTTTTTTAATGAACATGAAA
ATACAGGTTGGTACAGGGCGCAAAAAAACCGGTAACTTGAGTCTCGATTT
TATGAATCTAAGAATTATATTTCTAAGTATTCGTCGTAATTCCAAAATTT
AGATGGTTCATAGTTCATAGAAAATGGCTGGCAATTTACAAAACTACAAG
AATTGtgcaaatttggctttttttcacatccggtggatttccggcttcca
aaataaaaattaattttgagtgTTTCATTTACATAAGTCAAATGTCATAT
TTCACATAATCAAACCATACAAAATTTAGAAGTAccaaatcatttttttc
caacaggAACAAATTACCAAACATTTTGAGGATTGAGGTTAAGTCGGGAT
ACATACGTCGAAGAAGAAGTCACAGTGGAATCATGGAAATCGCGATaaga
attgttatttttgtattgtCAATGGTCAGTCGGTGGCTGAGTGTGATAGT
TAATTTACAatagaaatgctgaaaatcatAAGATTTTATATGCTTCAAAC
G
Run BLAST on NCBI

transcript from alignment at sc0004737:1..801

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043925 ID=TCONS_00043925|Name=TCONS_00043925|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at sc0004737:1..801 (Clytia hemisphaerica)
CGTTTGAAGCATATAAAATCTTatgattttcagcatttctatTGTAAATT
AACTATCACACTCAGCCACCGACTGACCATTGacaatacaaaaataacaa
ttcttATCGCGATTTCCATGATTCCACTGTGACTTCTTCTTCGACGTATG
TATCCCGACTTAACCTCAATCCTCAAAATGTTTGGTAATTTGTTcctgtt
ggaaaaaaatgatttggTACTTCTAAATTTTGTATGGTTTGATTATGTGA
AATATGACATTTGACTTATGTAAATGAAAcactcaaaattaatttttatt
ttggaagccggaaatccaccggatgtgaaaaaaagccaaatttgcaCAAT
TCTTGTAGTTTTGTAAATTGCCAGCCATTTTCTATGAACTATGAACCATC
TAAATTTTGGAATTACGACGAATACTTAGAAATATAATTCTTAGATTCAT
AAAATCGAGACTCAAGTTACCGGTTTTTTTGCGCCCTGTACCAACCTGTA
TTTTCATGTTCATTAAAAAACGAAAGCAGATTTTCGgctagaatgaaaaa
aaaactttcttttggaTTGcttggaatctcgaatcttgtCTTTTAGAATT
CAAAATATCGGATATTTTCGACCAGAAAGACGTAAAATTTTACCTTGCCT
TTCGTCCTTAACTCATCAAATCTCATGAATTTCCCGTattcattttcaag
ttttaattgtgtGTATTGTTCTCTAAGGATTTCattgttcttttctttct
tgtcttatttaaggcgaaattttcgacttctagtcgtcttgttaggattt
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027592XLOC_027592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043925-exon-sc0004737-1491911889:1..801TCONS_00043925-exon-sc0004737-1491911889:1..801Clytia hemisphaericaexon
TCONS_00043925-exon-sc0004737-1510915933:1..801TCONS_00043925-exon-sc0004737-1510915933:1..801Clytia hemisphaericaexon
TCONS_00043925-exon-sc0004737-1575043694:1..801TCONS_00043925-exon-sc0004737-1575043694:1..801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004737supercontigsc0004737:1..801 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3202	0.247652	0	0.207892	0.41394	0.917729	2.41558	2.10869	1.13829	1.03062	1.10652	0.82409	0.908923	1.19238	1.84272	1.86672	1.30398	1.83709	1.76287	1.36882	2.52119	3.29785	1.73803	1.71248	0	0	1.74489	2.06842	2.44069	1.54645
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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