TCONS_00043920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043920
Unique NameTCONS_00043920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043920 ID=TCONS_00043920|Name=TCONS_00043920|organism=Clytia hemisphaerica|type=transcript|length=918bp
CAAAATGGCAAACACTTGATTTCGCATTATTATTCTAAGGTGATCTGCAT
AATTTGGTTGTTTATtagaaatcttttaaattgagaaaaattaaaatttc
aattttatcgtTTTCAGGATGGTACTTACACTGTAGATTTGAATGCTTCT
GAACCAGGGCTTCATACAGTCGAGGTTGAATGGGATGGCCAACCTATACC
AGGGTCCCCGTTTTTGGTCCGCATCATGCAGGCACCCGATATGAAGAAAG
TTCGAGCACACGGTCCAGGTCTACTGTCCGGAATTATAAATCAATTCAAT
GGAAATTTTCAAGTTGATTCCAAAGGTGCGGGTCCTGGCACAATGAAAGT
ACGTATTCACGGCCCCAAAGGTGCTTTTAAAGTCGAAATGTATCGCGATA
ACCCTAAAGATAGATCAATCAATGTACGATACAATCCGTCCGAGCCTGGA
TTATATACGGCGAATATTTACTGGTCAGATGAGCACATTGTTGGATCACC
GTTCGAAATTTTTGTCGCTAAGAATGAACAAGAGTTGAATGAATGGAGAC
GCAAAGCGGAACAGTCTCATAACGGATACTAGACTTATTTCCGGTTATTT
TCTTGgttaaattttatgtttttttttgttgatttggcTTCTGCGGGTCT
GTTGCTTGACCCGGTGTTAGATATAAACTACTTCTGTGTAAGTAAGGCTC
Tatttcatacacgtttttttttttataagaacgtcaaaaatttttgaagc
cttcggatgttcttagttttttggatttgaagcctaaaaatgttcttaaa
atgtttttattttcagcattttttgagcattttgatgtaatttcttaagg
aaatgcatgtttttaagtctccaaagccttagaatgttcttagaatgttc
ttaaatttttgggcctcg
Run BLAST on NCBI

protein sequence of TCONS_00043920-protein

>TCONS_00043920-protein ID=TCONS_00043920-protein|Name=TCONS_00043920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGA
FKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKN
EQELNEWRRKAEQSHNGY
Run BLAST on NCBI

transcript from alignment at sc0004733:208..1562+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043920 ID=TCONS_00043920|Name=TCONS_00043920|organism=Clytia hemisphaerica|type=transcript|length=1355bp|location=Sequence derived from alignment at sc0004733:208..1562+ (Clytia hemisphaerica)
CAAAATGGCAAACACTTGATTTCGCATTATTATTCTAAGGTGATCTGCAT
AATTTGGTTGTTTATtagaaatcttttaaattgagaaaaattaaaatttc
aattttatcgtTTTCAGGATGGTACTTACACTGTAGATTTGAATGCTTCT
GAACCAGGGCTTCATACAGTCGAGGTTGAATGGGATGGCCAACCTATACC
AGGGTCCCCGTTTTTGGTCCGCATCATGCAGGCACCCGATATGAAGAAAG
TTCGAGCACACGGTCCAGGTCTACTGTCCGGAATTATAAGTATGTATTAA
TTATTCTTGGGACTatccattgcaaaggattagaacCATTTCAGTCCAGC
GAAGAGGCAGACCCGCCTCATTTTATCATCACCCGTGTTTCTTTATATCC
TATCATTGATCTCAAAGAGACCGGATGTTATCATCGGAGGCGAAATTATA
TCGTGAGAAATGtaaaacagcttaaaagttCTCAAAAAGGTGAAAGCTAA
GTCAAGTTAAGGTCAATAGAATTAAACACACCATTAAAAGACCTTTTTTG
GTCAATTCATCCTCTTTTGCATCGAACGTGATACAcctttattataagaa
caatttaataagaacaacgaggcttagaatctccaaaaaataagaacaat
tcaataAAAATGCTGAACCTTGAATTTCACTTAATCCTATGAATAACATA
ACGTAATTCATTTCTTTTAATTTCAGATCAATTCAATGGAAATTTTCAAG
TTGATTCCAAAGGTGCGGGTCCTGGCACAATGAAAGTACGTATTCACGGC
CCCAAAGGTGCTTTTAAAGTCGAAATGTATCGCGATAACCCTAAAGATAG
ATCAATCAATGTACGATACAATCCGTCCGAGCCTGGATTATATACGGCGA
ATATTTACTGGTCAGATGAGCACATTGTTGGATCACCGTTCGAAATTTTT
GTCGCTAAGAATGAACAAGAGTTGAATGAATGGAGACGCAAAGCGGAACA
GTCTCATAACGGATACTAGACTTATTTCCGGTTATTTTCTTGgttaaatt
ttatgtttttttttgttgatttggcTTCTGCGGGTCTGTTGCTTGACCCG
GTGTTAGATATAAACTACTTCTGTGTAAGTAAGGCTCTatttcatacacg
tttttttttttataagaacgtcaaaaatttttgaagccttcggatgttct
tagttttttggatttgaagcctaaaaatgttcttaaaatgtttttatttt
cagcattttttgagcattttgatgtaatttcttaaggaaatgcatgtttt
taagtctccaaagccttagaatgttcttagaatgttcttaaatttttggg
cctcg

Coding sequence (CDS) from alignment at sc0004733:208..1562+

>TCONS_00043920 ID=TCONS_00043920|Name=TCONS_00043920|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0004733:208..1562+ (Clytia hemisphaerica)
ATGCAGGCACCCGATATGAAGAAAGTTCGAGCACACGGTCCAGGTCTACT
GTCCGGAATTATAAATCAATTCAATGGAAATTTTCAAGTTGATTCCAAAG
GTGCGGGTCCTGGCACAATGAAAGTACGTATTCACGGCCCCAAAGGTGCT
TTTAAAGTCGAAATGTATCGCGATAACCCTAAAGATAGATCAATCAATGT
ACGATACAATCCGTCCGAGCCTGGATTATATACGGCGAATATTTACTGGT
CAGATGAGCACATTGTTGGATCACCGTTCGAAATTTTTGTCGCTAAGAAT
GAACAAGAGTTGAATGAATGGAGACGCAAAGCGGAACAGTCTCATAACGG
ATACTAGATGCAGGCACCCGATATGAAGAAAGTTCGAGCACACGGTCCAG
GTCTACTGTCCGGAATTATAAATCAATTCAATGGAAATTTTCAAGTTGAT
TCCAAAGGTGCGGGTCCTGGCACAATGAAAGTACGTATTCACGGCCCCAA
AGGTGCTTTTAAAGTCGAAATGTATCGCGATAACCCTAAAGATAGATCAA
TCAATGTACGATACAATCCGTCCGAGCCTGGATTATATACGGCGAATATT
TACTGGTCAGATGAGCACATTGTTGGATCACCGTTCGAAATTTTTGTCGC
TAAGAATGAACAAGAGTTGAATGAATGGAGACGCAAAGCGGAACAGTCTC
ATAACGGATACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027587XLOC_027587Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043920-proteinTCONS_00043920-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043920-exon-sc0004733-1491911889:208..496TCONS_00043920-exon-sc0004733-1491911889:208..496Clytia hemisphaericaexon
TCONS_00043920-exon-sc0004733-1510915933:208..496TCONS_00043920-exon-sc0004733-1510915933:208..496Clytia hemisphaericaexon
TCONS_00043920-exon-sc0004733-1575043694:208..496TCONS_00043920-exon-sc0004733-1575043694:208..496Clytia hemisphaericaexon
TCONS_00043920-exon-sc0004733-1491911889:934..1562TCONS_00043920-exon-sc0004733-1491911889:934..1562Clytia hemisphaericaexon
TCONS_00043920-exon-sc0004733-1510915933:934..1562TCONS_00043920-exon-sc0004733-1510915933:934..1562Clytia hemisphaericaexon
TCONS_00043920-exon-sc0004733-1575043694:934..1562TCONS_00043920-exon-sc0004733-1575043694:934..1562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004733supercontigsc0004733:208..1562 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
117.167	110.003	179.706	192.724	90.7387	56.5365	73.8367	76.9477	38.5491	50.0168	35.3237	30.5152	79.0423	61.8792	2.20057	2.59919	58.5557	70.1484	128.339	233.359	88.7251	91.4029	92.3518	80.5647	47.8007	39.4685	14.0541	15.0254	41.2818	43.9017
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001298Filamin/ABP280_rpt
IPR013783Ig-like_fold
IPR017868Filamin/ABP280_repeat-like
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00043920 vs. Swiss-Prot (Human)
Match: FLNB (Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-20
Identity = 56/131 (42.75%), Postives = 73/131 (55.73%), Query Frame = 1 
Query:  118 DGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEI 510
            DGTY V+    E GLH VEV +D  PIP SPF V + +     +V+A GPGL     N+ N  F V ++GAG G + + + GP  + K+   RDN KD S +  Y P  PG Y  NI +   HI GSPF +
Sbjct: 1287 DGTYQVEYTPFEKGLHVVEVTYDDVPIPNSPFKVAVTEGCQPSRVQAQGPGLKEAFTNKPN-VFTVVTRGAGIGGLGITVEGPSES-KINC-RDN-KDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRV 1413

HSP 2 Score: 90.5077 bits (223), Expect = 8.627e-20
Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  112 FQDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFV 516
            F DG Y  +   S PG +++ + W G  IP SPF V++     M+KVRA GPGL  GI+ + + +F V+S G+  G++   I GP  A K+E Y D   D S +V+Y P EPG Y  +I   DE I  SP+  F+
Sbjct:  506 FLDGVYAFEYYPSTPGRYSIAITWGGHHIPKSPFEVQVGPEAGMQKVRAWGPGLHGGIVGR-SADFVVESIGSEVGSLGFAIEGPSQA-KIE-YNDQ-NDGSCDVKYWPKEPGEYAVHIMCDDEDIKDSPYMAFI 636

HSP 3 Score: 84.7297 bits (208), Expect = 5.524e-18
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:  151 EPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFE 507
            E GL+ V+V +DG P+PGSP+ V     PD  KV+AHGPGL  G++ +    F +D+KGAG G + + + GP  A K+E   DN  D + +V Y P++PG Y  NI + + HI GSPF+
Sbjct: 1010 EEGLYAVDVTYDGHPVPGSPYTVEASLPPDPSKVKAHGPGLEGGLVGK-PAEFTIDTKGAGTGGLGLTVEGPCEA-KIEC-SDN-GDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFK 1124

HSP 4 Score: 82.0333 bits (201), Expect = 4.853e-17
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 1 
Query:  115 QDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFV 516
            +DG+ + +     PG + V + + G  IPGSPF V +    D  KV+  GPGL SG+  +   +F VDS  AG   ++VR+ GP+G  +     DN  D +  V Y PS+ G Y  ++ ++DE I  SPF++ V
Sbjct: 1379 KDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVPVKDVVDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVDN-GDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVKV 1511

HSP 5 Score: 80.8777 bits (198), Expect = 1.112e-16
Identity = 47/145 (32.41%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:  115 QDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNEQELNEWR 549
            +DGT TV    +E GLH + +++ G  IP SP    +   P+   V A+GPGL+ G+ N+    F + ++ AG G + + I GP    K E+   + KD +  V Y P+ PG Y+  + ++D+HI GSPF   +  + +  ++ +
Sbjct: 1780 KDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPLQFYV-NYPNSGSVSAYGPGLVYGVANK-TATFTIVTEDAGEGGLDLAIEGPS---KAEISCIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAKITDDSRRCSQVK 1919

HSP 6 Score: 78.5666 bits (192), Expect = 4.949e-16
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 1 
Query:  151 EPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLL-SGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNE--QELNEW 546
            +PG H V++ + G  IP SPF+V++ +A +    RA G GL   G+  +   +F+VD+K AG G + V + GPKG  ++   +D   D      Y PS PG Y+  I W   HI  SPFE+ V      Q++  W
Sbjct:  422 QPGPHVVKIFFAGDTIPKSPFVVQVGEACNPNACRASGRGLQPKGVRIRETTDFKVDTKAAGSGELGVTMKGPKGLEELVKQKDF-LDGVYAFEYYPSTPGRYSIAITWGGHHIPKSPFEVQVGPEAGMQKVRAW 555
The following BLAST results are available for this feature:
BLAST of TCONS_00043920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLNB1.862e-2042.75Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2[more]
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