|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043900 ID=TCONS_00043900|Name=TCONS_00043900|organism=Clytia hemisphaerica|type=transcript|length=260bp
CACAGATGATGTTACGCAAGGAAATCGTCACAAGCCATAATGCGCGTTca
gcagattttgaaaatgaaagtgtaaAGAATAAACATTGCTGAAACGTGTT
TAAAACGCGGcttGAAAGTCAACTCTGGAAAACTTCTGAGAAGAATCATT
TCCATCCATTGTCATCACTGGTGTTCGAGGCCAGatttcAAGACCACCCT
TCACTCTGTGTGAGGGGTTATACTCAGCATTATCAGCTCAATCGGCACTA
TCAGCTTAAT Run BLAST on NCBI transcript from alignment at sc0004709:1526..2940+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043900 ID=TCONS_00043900|Name=TCONS_00043900|organism=Clytia hemisphaerica|type=transcript|length=1415bp|location=Sequence derived from alignment at sc0004709:1526..2940+ (Clytia hemisphaerica)
CACAGATGATGTTACGCAAGGAAATCGTCACAAGCCATAATGCGCGTTca
gcagattttgaaaatgaaagtgtaaAGAATAAACATTGCTGAAACGTGTT
TAAAACGCGGGTAAAAAGTCCTTGGCTGGTTTGTGAgcctttgaaatttg
tttattttgtattctGATTGCTCTCTCATGATGCCCCGCCAttatgaagt
ttttttttgtgtctGCTAAATGCGATTTTGGGATACTTTGCATTACCAAC
TTTTGCTTGCGGCAAACACCCTTGCCACATTGATTGAGTcccatttgagt
tttttttcgtCCACCTTCATTGAAATTATCAACTTGACATTCACTGACAT
GATAGAGCCAACTGATTGGATTTGGGGATATTTTATGACGCAAACGGAAC
ATATTATTGATATACGCTTAAGCAACAACCAGCAGCAAGgcagaaaaatt
taaacacaGATTCTGTCCTTGCATCTTTCCAATCTTTGAAAATGGCTGAT
AGAACTAAACAAGGATTGACAACCAGCTTTTTAGCGTtttttgattggtg
ttcgattgaATTCaatgaattgattttttttattttttgttttttttcag
cttGAAAGTCAACTCTGGAAAACTTCTGAGAAGAATCATTTCCATCCATT
GTCATCACTGGTGTTCGAGGCCAGGTTAGTACTTACTGGGATGATTTTAA
TTGTCTTATAAGAATAGtattattttgctataaaaCAATAGCAGCTGAAA
AACTTCTTTCCTCCAAGACTATTTAAAGTCTTAAATTAACCTTTTTTAAG
AGTATAAATTAATGcgaatgaccaaaatatttaaCCATTaagttttgcgg
aatttaataaTGCGAATTGGGCCAAATTCGCATTAAATAGCCCCGCATTA
ATTTATACTCTTAAGGTATTCAAAACCAAACCAAAAGTCAAATCTTTTGT
ACAATAAGGGGTGACAGATTATTGCAGATGatgattcaaattattttcta
gAATAATCTAAGTTAATAATGGTAGCAGCCCCAGCggacatcaaaaaatt
ttctggttccCAACTTTTGTCACTCTTATCTCTAAAAGCCGGGTTAGAAA
GTTTGTAAAAAGACCCGAGAAATcgaaattcaataaaaattaaGGTCCGC
TCCTTAAGAGCTTCAGCGTGGGTGGCTGCCAATATGCCattggaatatca
gataagtcaTTTTTGCTGACCACCCGCCCGTCTGGTACTTATAAGACACG
CTGCGACAGGAACAATTGAATTTTTCGATGTCCACCCTATCACCTTTATG
TCGTACAATTATAtcttcctaatttttttttttttacagatttcAAGACC
ACCCTTCACTCTGTGTGAGGGGTTATACTCAGCATTATCAGCTCAATCGG
CACTATCAGCTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043900-exon-sc0004709-1491911889:1526..1635 | TCONS_00043900-exon-sc0004709-1491911889:1526..1635 | Clytia hemisphaerica | exon |
| TCONS_00043900-exon-sc0004709-1510915933:1526..1635 | TCONS_00043900-exon-sc0004709-1510915933:1526..1635 | Clytia hemisphaerica | exon |
| TCONS_00043900-exon-sc0004709-1575043694:1526..1635 | TCONS_00043900-exon-sc0004709-1575043694:1526..1635 | Clytia hemisphaerica | exon |
| TCONS_00043900-exon-sc0004709-1491911889:2126..2199 | TCONS_00043900-exon-sc0004709-1491911889:2126..2199 | Clytia hemisphaerica | exon |
| TCONS_00043900-exon-sc0004709-1510915933:2126..2199 | TCONS_00043900-exon-sc0004709-1510915933:2126..2199 | Clytia hemisphaerica | exon |
| TCONS_00043900-exon-sc0004709-1575043694:2126..2199 | TCONS_00043900-exon-sc0004709-1575043694:2126..2199 | Clytia hemisphaerica | exon |
| TCONS_00043900-exon-sc0004709-1491911889:2865..2940 | TCONS_00043900-exon-sc0004709-1491911889:2865..2940 | Clytia hemisphaerica | exon |
| TCONS_00043900-exon-sc0004709-1510915933:2865..2940 | TCONS_00043900-exon-sc0004709-1510915933:2865..2940 | Clytia hemisphaerica | exon |
| TCONS_00043900-exon-sc0004709-1575043694:2865..2940 | TCONS_00043900-exon-sc0004709-1575043694:2865..2940 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004709 | supercontig | sc0004709:1526..2940 + |
Blast
The following BLAST results are available for this feature:
|
