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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043887 ID=TCONS_00043887|Name=TCONS_00043887|organism=Clytia hemisphaerica|type=transcript|length=1523bp
CTTTTACCTTGTAATTTATCAAACTCTTTTTTCCTTTCTGATTTATTTAG
AAGCCGATGAGTTTCTTTCCTCATTTTATctttttcgcgaatttttgctt
tgtctgattcgtctagattttttcttaaatttttcttttttaattggtCA
GATCTTCGAACTTTTGCTTTGTCTGATTCGTCTAGATTTTTTCTTAAGAT
TCCCATTCTTTTTGAAGCAGATTTTCGTTCTTTTGCTTTGTCTGATTCAT
CTAgatttgttcttaaatttccCTTTCTTAATTGGTCAGATCTTCGAACT
TTTGCTTTGTCTGATTCGtctagattttttcttaaattttccattctttt
ttaagcagattttcgttcttttgctttgtctgattcgtctagattttttc
ttaaaatttccattCTTTTTGAAGCAGATTTTCGTTCTTTTGCTTTGTCT
GATTCATCTAGATTTTTCCTCCAACTTTCCTTTTTTAGTTTATCAAATTt
acgaacattttctttctcaaattcatcTTGGTTATCCCTCATATCTTTCT
TTCGTTTTCTATCAGTGtctttaaaaagctcttttttgaCATCATCGAGA
TTATACCTGGCTTTTTTCATTGCAGTCTTTTTTGACACAGTTTTGAAATT
TCGCTTCCTTTTGAAAGGAGTAGACCTAATAATATCGGACTCTAGCTTGT
TTTTCGATGCCGTGACTTTACGTTCTTGATTTTCTAATTCTTTGAGGAGg
gcattttttatcattttttctgGTTGAATATTTGATGATTGATCAATAGA
AAATTCAATGGTATTCAAATTGCCATTTGTATTTATCTCTTTAGGTTTAT
CTTTGTCGGTTCCAACTAACTTTGATTCAATTTTGAAAGTATTGGGAATT
TCTGAACTTTCAATGAAAATTCTATCTTTACTAGAGGTTCGGTCACGAAT
GTTATCATCGGAGTTCAGAGGCAAAGAATCAATTTCTCGATTGCATTTTT
TGTAAATCAATACGTATGGAACTATTTTATCACTAATTTTGCAGTTNCTA
TCTTCACTAGAGGTTTGGTCACGAATGTTATTATCGGAGTTCAGAGGCAA
AGAATCAATTTCTCGATTGCATTTCTTGTAAATCAATATGTATGGAACTA
TTTTATCACTAATTCTGCAGTTAAACTCATCATTTTTAATAACGGTAACA
TGATCATCATTTACTGAATACCATTGTTCATTATATTTTACAACAGATGT
ATAATGACCACTATCAGGTGTATCGCCGTGATGATAAACAATTGCTTGCA
ATTCAAGTGTCCCGAGAAGAACGTTTTCTATTTCTGTTTCAATATTTAAA
TTTGGAACTAATTTCTTTAAGCGTCCGGTGGTTTGATCATAGCAAAAAAT
TACAAGTTGGATGATCAAGGCATGAGAAACATTAAATAGGGTTCTACTTT
TTGTGGCATTTGTTCTTATTGGGCAATTTGAGCATACGTAGTCTTCAATA
AGTTCGCCGTAAGGATCATTANN Run BLAST on NCBI protein sequence of TCONS_00043887-protein >TCONS_00043887-protein ID=TCONS_00043887-protein|Name=TCONS_00043887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
XNDPYGELIEDYVCSNCPIRTNATKSRTLFNVSHALIIQLVIFCYDQTTG
RLKKLVPNLNIETEIENVLLGTLELQAIVYHHGDTPDSGHYTSVVKYNEQ
WYSVNDDHVTVIKNDEFNCRISDKIVPYILIYKKCNREIDSLPLNSDNNI
RDQTSSEDXNCKISDKIVPYVLIYKKCNREIDSLPLNSDDNIRDRTSSKD
RIFIESSEIPNTFKIESKLVGTDKDKPKEINTNGNLNTIEFSIDQSSNIQ
PEKMIKNALLKELENQERKVTASKNKLESDIIRSTPFKRKRNFKTVSKKT
AMKKARYNLDDVKKELFKDTDRKRKKDMRDNQDEFEKENVRKFDKLKKES
WRKNLDESDKAKERKSASKRMEILRKNLDESDKAKERKSA Run BLAST on NCBI transcript from alignment at sc0004700:4358..5880 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043887 ID=TCONS_00043887|Name=TCONS_00043887|organism=Clytia hemisphaerica|type=transcript|length=1523bp|location=Sequence derived from alignment at sc0004700:4358..5880 (Clytia hemisphaerica)
NNTAATGATCCTTACGGCGAACTTATTGAAGACTACGTATGCTCAAATTG
CCCAATAAGAACAAATGCCACAAAAAGTAGAACCCTATTTAATGTTTCTC
ATGCCTTGATCATCCAACTTGTAATTTTTTGCTATGATCAAACCACCGGA
CGCTTAAAGAAATTAGTTCCAAATTTAAATATTGAAACAGAAATAGAAAA
CGTTCTTCTCGGGACACTTGAATTGCAAGCAATTGTTTATCATCACGGCG
ATACACCTGATAGTGGTCATTATACATCTGTTGTAAAATATAATGAACAA
TGGTATTCAGTAAATGATGATCATGTTACCGTTATTAAAAATGATGAGTT
TAACTGCAGAATTAGTGATAAAATAGTTCCATACATATTGATTTACAAGA
AATGCAATCGAGAAATTGATTCTTTGCCTCTGAACTCCGATAATAACATT
CGTGACCAAACCTCTAGTGAAGATAGNAACTGCAAAATTAGTGATAAAAT
AGTTCCATACGTATTGATTTACAAAAAATGCAATCGAGAAATTGATTCTT
TGCCTCTGAACTCCGATGATAACATTCGTGACCGAACCTCTAGTAAAGAT
AGAATTTTCATTGAAAGTTCAGAAATTCCCAATACTTTCAAAATTGAATC
AAAGTTAGTTGGAACCGACAAAGATAAACCTAAAGAGATAAATACAAATG
GCAATTTGAATACCATTGAATTTTCTATTGATCAATCATCAAATATTCAA
CcagaaaaaatgataaaaaatgccCTCCTCAAAGAATTAGAAAATCAAGA
ACGTAAAGTCACGGCATCGAAAAACAAGCTAGAGTCCGATATTATTAGGT
CTACTCCTTTCAAAAGGAAGCGAAATTTCAAAACTGTGTCAAAAAAGACT
GCAATGAAAAAAGCCAGGTATAATCTCGATGATGtcaaaaaagagctttt
taaagaCACTGATAGAAAACGAAAGAAAGATATGAGGGATAACCAAgatg
aatttgagaaagaaaatgttcgtaAATTTGATAAACTAAAAAAGGAAAGT
TGGAGGAAAAATCTAGATGAATCAGACAAAGCAAAAGAACGAAAATCTGC
TTCAAAAAGaatggaaattttaagaaaaaatctagacgaatcagacaaag
caaaagaacgaaaatctgcttaaaaaagaatggaaaatttaagaaaaaat
ctagaCGAATCAGACAAAGCAAAAGTTCGAAGATCTGACCAATTAAGAAA
GggaaatttaagaacaaatcTAGATGAATCAGACAAAGCAAAAGAACGAA
AATCTGCTTCAAAAAGAATGGGAATCTTAAGAAAAAATCTAGACGAATCA
GACAAAGCAAAAGTTCGAAGATCTGaccaattaaaaaagaaaaatttaag
aaaaaatctagacgaatcagacaaagcaaaaattcgcgaaaaagATAAAA
TGAGGAAAGAAACTCATCGGCTTCTAAATAAATCAGAAAGGAAAAAAGAG
TTTGATAAATTACAAGGTAAAAG Coding sequence (CDS) from alignment at sc0004700:4358..5880 >TCONS_00043887 ID=TCONS_00043887|Name=TCONS_00043887|organism=Clytia hemisphaerica|type=CDS|length=1173bp|location=Sequence derived from alignment at sc0004700:4358..5880 (Clytia hemisphaerica)
NNTAATGATCCTTACGGCGAACTTATTGAAGACTACGTATGCTCAAATTG
CCCAATAAGAACAAATGCCACAAAAAGTAGAACCCTATTTAATGTTTCTC
ATGCCTTGATCATCCAACTTGTAATTTTTTGCTATGATCAAACCACCGGA
CGCTTAAAGAAATTAGTTCCAAATTTAAATATTGAAACAGAAATAGAAAA
CGTTCTTCTCGGGACACTTGAATTGCAAGCAATTGTTTATCATCACGGCG
ATACACCTGATAGTGGTCATTATACATCTGTTGTAAAATATAATGAACAA
TGGTATTCAGTAAATGATGATCATGTTACCGTTATTAAAAATGATGAGTT
TAACTGCAGAATTAGTGATAAAATAGTTCCATACATATTGATTTACAAGA
AATGCAATCGAGAAATTGATTCTTTGCCTCTGAACTCCGATAATAACATT
CGTGACCAAACCTCTAGTGAAGATAGNAACTGCAAAATTAGTGATAAAAT
AGTTCCATACGTATTGATTTACAAAAAATGCAATCGAGAAATTGATTCTT
TGCCTCTGAACTCCGATGATAACATTCGTGACCGAACCTCTAGTAAAGAT
AGAATTTTCATTGAAAGTTCAGAAATTCCCAATACTTTCAAAATTGAATC
AAAGTTAGTTGGAACCGACAAAGATAAACCTAAAGAGATAAATACAAATG
GCAATTTGAATACCATTGAATTTTCTATTGATCAATCATCAAATATTCAA
CcagaaaaaatgataaaaaatgccCTCCTCAAAGAATTAGAAAATCAAGA
ACGTAAAGTCACGGCATCGAAAAACAAGCTAGAGTCCGATATTATTAGGT
CTACTCCTTTCAAAAGGAAGCGAAATTTCAAAACTGTGTCAAAAAAGACT
GCAATGAAAAAAGCCAGGTATAATCTCGATGATGtcaaaaaagagctttt
taaagaCACTGATAGAAAACGAAAGAAAGATATGAGGGATAACCAAgatg
aatttgagaaagaaaatgttcgtaAATTTGATAAACTAAAAAAGGAAAGT
TGGAGGAAAAATCTAGATGAATCAGACAAAGCAAAAGAACGAAAATCTGC
TTCAAAAAGaatggaaattttaagaaaaaatctagacgaatcagacaaag
caaaagaacgaaaatctgcttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043887-exon-sc0004700-1491911889:4358..5880 | TCONS_00043887-exon-sc0004700-1491911889:4358..5880 | Clytia hemisphaerica | exon |
| TCONS_00043887-exon-sc0004700-1510915933:4358..5880 | TCONS_00043887-exon-sc0004700-1510915933:4358..5880 | Clytia hemisphaerica | exon |
| TCONS_00043887-exon-sc0004700-1575043694:4358..5880 | TCONS_00043887-exon-sc0004700-1575043694:4358..5880 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004700 | supercontig | sc0004700:4358..5880 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028889 | USP_dom |
Blast
The following BLAST results are available for this feature:
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