|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043858 ID=TCONS_00043858|Name=TCONS_00043858|organism=Clytia hemisphaerica|type=transcript|length=2355bp
CCGACTTTCCGACTAAAAACAATCAGATTTTTCAGATCAAAAGTGAGTCG
GTTGGACGACGCGAACACAAGTTATTTGTGATCTCGGCCAAAGCAGTTAC
GATAATAGTATAGTGATTTTTTAAACAGCTTATTCAGAAGGTTTTATATA
TAAACATTTAAAGATCAGATATAGTTGCTATGAAAGAACGATATGTTGAC
ATTGCACAAAGCTACGGTACAGTAGTTGTAGGTTCTGTCTATAAAATAAA
TATTCAATTAGCTTTTAAAATTTAAAACTTTTAAAAGGGGGAGCTTAATA
AGCATTTTCATTGTATCTTTGAAAAATATTTTTCAGCCCAAAATTTGTAT
ATTATATATATGGAAACAGATGGAAAATGAATGATATCATTTTTTCAAAA
ATTCCTGAATAAAACATATACATAAAGTCATTCACTTTTTTTCTAACTTC
TTATTCTTTTAACCATTCAGCAAGTCCTTTCTGGCTGCTTCCAAATTTTG
TTTTCCTCTCCTGAAGCAATCTTGGAACGTTACCGTACAATTTTGAAACA
GTCTGCATTCAGCACAAAACTTATATCAATTGTTGTCGATGAGAGTCATA
TTGTTGAGAAATGGTAATTATTATAGTTAAGATTTGCAGAATATTTCTAA
AATAAACTTTTTTTCGCATATTCTTGTAGAAATACACTTCAACAGTTGTC
ATTATGGTTCCTTTGTTTTCTAGTCGAGGGTGTGAACAGATTTTCATCAG
TTTGAAGTATTGTTTTGCTATTTTTGCATTCAGTTACTTTGTTCAGAAAT
AATATTTTGGTTTTTTTAGGGGCTCAGACAGTGAGGATGGTGAGGCATTT
CGTGCAAGCTATGGTCAGCTTAGTCAAATGAGGTCCCTGTTGACCCATCC
TGTCCCAATGGCTGCCTTAACAGCTACAGCAACAACTAAATTGACTAAAG
CTGTTATAAATAGTCTAGGCTTGAATTCACCAAAGATCATTAGAAAAATA
CCAAACAAAGACAACATTAGATATTTTGTATTAAAATCTGAGATCAAGGA
TCCAAGCTTAATATTCAAAAATTATGTTAATGATATGATGTTAAATGGTT
ACAAATCAAAGAAGGTTCTTGTGTTTGCTAGAAGAGTTGACCAAAGTACA
TTGATTTTTGATGCCTTTAACGATGCAATGAAAGATAAATATAAAAACTT
CAAAACTAGGCCTTACGCTAAGTATACAGCAGAAACAGATCCAGATGTTC
TTGATTGGGTCCTTAATTCCTTTTCAGCCGCTGATGGAAAGGTCAGATTT
TTAGTAGCCTCTGTAGCGTTTGGCATGGGTGTAGACTGTAAAGGTTTACA
CTCAGTCATCCACTATGGACCTCCATGCAGTCTGGATGACTATTTCCAAC
AGTCTGGAAGAGCTGGAAGAGATGGCCAGAAAAGCCAGGCTATTATCATC
AAATATCCTCATTCTTGTGCCTCTCCCAAGATAGATAAAGAAATGAAAGA
TTATTGCTCGACAAAGGAGGTATGTCGTAGGAAAACATTACTTTCCCAAT
ATTCTACAAGTCAATTGAAACCTTTGGAAAAGCAGCATGATTGTTGTGAT
ATTTGTCAACAACAATGTTCATGCGGAAATTGTGATGCAATATGTACTGT
ACATGACTTAGTTTTATTTAAACCAAATGAAAAACAAAAGCCAAGTTGTA
TACTCAATGCACATGGGCGTGAAATACTAAGAAACAGTCTTCTGAGCTTA
CGACAACAATACTCAGATTCTCAATCAAGCAAGGGTGTGCTTCTAAATAA
TGATTTGACATCAGGATTCCCTTTGAGTTCAATTGAGGAAATAATTGATA
TATCCAATCATAGTTTTGATGAAAGCTATATTACTCTATTCACCTCTCTT
TTCAATATGGATGTCATTCCCAAAGTGGTTTACATTGTCCAGAATGTTTT
AAAACAACATGACCTTTTATGTCAAGAAACTGCAGCTAGTAAAAGTTTCA
ATGACAGTGAATATAATCGAATTGGCTCTGAACCAGATATAGAAGAAAGC
GACACTGACACTGATATAAGAGCAGGTTCAATGCATGATGATTCCTTTAG
CTCAGACAACTCTTCTTTATCTTCATCTGACTTTTGATTTTTTGCTTAGT
ATTGATTTGTTTTTAAGAGTGTTTTAGAATACTTTTGTCATATACTTTGC
AATATGATATTCACTAGGTAAAATTCTCATGTCAGGCTTGTAAGACAATC
ATAAAAGAATTTTTATATGTTTTGCTTTTAAAAGTTTTGAGATTTGCATT
TCATTCAAGTAAAACTTTAGTTTAGAATAATTTGACAATTTGAAAGAAGC
AAGAG Run BLAST on NCBI protein sequence of TCONS_00043858-protein >TCONS_00043858-protein ID=TCONS_00043858-protein|Name=TCONS_00043858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
MRSLLTHPVPMAALTATATTKLTKAVINSLGLNSPKIIRKIPNKDNIRYF
VLKSEIKDPSLIFKNYVNDMMLNGYKSKKVLVFARRVDQSTLIFDAFNDA
MKDKYKNFKTRPYAKYTAETDPDVLDWVLNSFSAADGKVRFLVASVAFGM
GVDCKGLHSVIHYGPPCSLDDYFQQSGRAGRDGQKSQAIIIKYPHSCASP
KIDKEMKDYCSTKEVCRRKTLLSQYSTSQLKPLEKQHDCCDICQQQCSCG
NCDAICTVHDLVLFKPNEKQKPSCILNAHGREILRNSLLSLRQQYSDSQS
SKGVLLNNDLTSGFPLSSIEEIIDISNHSFDESYITLFTSLFNMDVIPKV
VYIVQNVLKQHDLLCQETAASKSFNDSEYNRIGSEPDIEESDTDTDIRAG
SMHDDSFSSDNSSLSSSDF Run BLAST on NCBI transcript from alignment at sc0004670:2035..4389 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043858 ID=TCONS_00043858|Name=TCONS_00043858|organism=Clytia hemisphaerica|type=transcript|length=2355bp|location=Sequence derived from alignment at sc0004670:2035..4389 (Clytia hemisphaerica)
CTCTTGCTTCTTTCAAATTGTCAAATTATTCTAAACTAAAGTTTTACTTG
AATGAAATGCAAATCTCAAAACTTTTAAAAGCAAAACATATAAAAATTCT
TTTATGATTGTCTTACAAGCCTGACATGAGAATTTTACCTAGTGAATATC
ATATTGCAAAGTATATGACAAAAGTATTCTAAAACACTCTTAAAAACAAA
TCAATACTAAGCAAAAAATCAAAAGTCAGATGAAGATAAAGAAGAGTTGT
CTGAGCTAAAGGAATCATCATGCATTGAACCTGCTCTTATATCAGTGTCA
GTGTCGCTTTCTTCTATATCTGGTTCAGAGCCAATTCGATTATATTCACT
GTCATTGAAACTTTTACTAGCTGCAGTTTCTTGACATAAAAGGTCATGTT
GTTTTAAAACATTCTGGACAATGTAAACCACTTTGGGAATGACATCCATA
TTGAAAAGAGAGGTGAATAGAGTAATATAGCTTTCATCAAAACTATGATT
GGATATATCAATTATTTCCTCAATTGAACTCAAAGGGAATCCTGATGTCA
AATCATTATTTAGAAGCACACCCTTGCTTGATTGAGAATCTGAGTATTGT
TGTCGTAAGCTCAGAAGACTGTTTCTTAGTATTTCACGCCCATGTGCATT
GAGTATACAACTTGGCTTTTGTTTTTCATTTGGTTTAAATAAAACTAAGT
CATGTACAGTACATATTGCATCACAATTTCCGCATGAACATTGTTGTTGA
CAAATATCACAACAATCATGCTGCTTTTCCAAAGGTTTCAATTGACTTGT
AGAATATTGGGAAAGTAATGTTTTCCTACGACATACCTCCTTTGTCGAGC
AATAATCTTTCATTTCTTTATCTATCTTGGGAGAGGCACAAGAATGAGGA
TATTTGATGATAATAGCCTGGCTTTTCTGGCCATCTCTTCCAGCTCTTCC
AGACTGTTGGAAATAGTCATCCAGACTGCATGGAGGTCCATAGTGGATGA
CTGAGTGTAAACCTTTACAGTCTACACCCATGCCAAACGCTACAGAGGCT
ACTAAAAATCTGACCTTTCCATCAGCGGCTGAAAAGGAATTAAGGACCCA
ATCAAGAACATCTGGATCTGTTTCTGCTGTATACTTAGCGTAAGGCCTAG
TTTTGAAGTTTTTATATTTATCTTTCATTGCATCGTTAAAGGCATCAAAA
ATCAATGTACTTTGGTCAACTCTTCTAGCAAACACAAGAACCTTCTTTGA
TTTGTAACCATTTAACATCATATCATTAACATAATTTTTGAATATTAAGC
TTGGATCCTTGATCTCAGATTTTAATACAAAATATCTAATGTTGTCTTTG
TTTGGTATTTTTCTAATGATCTTTGGTGAATTCAAGCCTAGACTATTTAT
AACAGCTTTAGTCAATTTAGTTGTTGCTGTAGCTGTTAAGGCAGCCATTG
GGACAGGATGGGTCAACAGGGACCTCATTTGACTAAGCTGACCATAGCTT
GCACGAAATGCCTCACCATCCTCACTGTCTGAGCCCCTAAAAAAACCAAA
ATATTATTTCTGAACAAAGTAACTGAATGCAAAAATAGCAAAACAATACT
TCAAACTGATGAAAATCTGTTCACACCCTCGACTAGAAAACAAAGGAACC
ATAATGACAACTGTTGAAGTGTATTTCTACAAGAATATGCGAAAAAAAGT
TTATTTTAGAAATATTCTGCAAATCTTAACTATAATAATTACCATTTCTC
AACAATATGACTCTCATCGACAACAATTGATATAAGTTTTGTGCTGAATG
CAGACTGTTTCAAAATTGTACGGTAACGTTCCAAGATTGCTTCAGGAGAG
GAAAACAAAATTTGGAAGCAGCCAGAAAGGACTTGCTGAATGGTTAAAAG
AATAAGAAGTTAGAAAAAAAGTGAATGACTTTATGTATATGTTTTATTCA
GGAATTTTTGAAAAAATGATATCATTCATTTTCCATCTGTTTCCATATAT
ATAATATACAAATTTTGGGCTGAAAAATATTTTTCAAAGATACAATGAAA
ATGCTTATTAAGCTCCCCCTTTTAAAAGTTTTAAATTTTAAAAGCTAATT
GAATATTTATTTTATAGACAGAACCTACAACTACTGTACCGTAGCTTTGT
GCAATGTCAACATATCGTTCTTTCATAGCAACTATATCTGATCTTTAAAT
GTTTATATATAAAACCTTCTGAATAAGCTGTTTAAAAAATCACTATACTA
TTATCGTAACTGCTTTGGCCGAGATCACAAATAACTTGTGTTCGCGTCGT
CCAACCGACTCACTTTTGATCTGAAAAATCTGATTGTTTTTAGTCGGAAA
GTCGG Coding sequence (CDS) from alignment at sc0004670:2035..4389 >TCONS_00043858 ID=TCONS_00043858|Name=TCONS_00043858|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0004670:2035..4389 (Clytia hemisphaerica)
TCAAAAGTCAGATGAAGATAAAGAAGAGTTGTCTGAGCTAAAGGAATCAT
CATGCATTGAACCTGCTCTTATATCAGTGTCAGTGTCGCTTTCTTCTATA
TCTGGTTCAGAGCCAATTCGATTATATTCACTGTCATTGAAACTTTTACT
AGCTGCAGTTTCTTGACATAAAAGGTCATGTTGTTTTAAAACATTCTGGA
CAATGTAAACCACTTTGGGAATGACATCCATATTGAAAAGAGAGGTGAAT
AGAGTAATATAGCTTTCATCAAAACTATGATTGGATATATCAATTATTTC
CTCAATTGAACTCAAAGGGAATCCTGATGTCAAATCATTATTTAGAAGCA
CACCCTTGCTTGATTGAGAATCTGAGTATTGTTGTCGTAAGCTCAGAAGA
CTGTTTCTTAGTATTTCACGCCCATGTGCATTGAGTATACAACTTGGCTT
TTGTTTTTCATTTGGTTTAAATAAAACTAAGTCATGTACAGTACATATTG
CATCACAATTTCCGCATGAACATTGTTGTTGACAAATATCACAACAATCA
TGCTGCTTTTCCAAAGGTTTCAATTGACTTGTAGAATATTGGGAAAGTAA
TGTTTTCCTACGACATACCTCCTTTGTCGAGCAATAATCTTTCATTTCTT
TATCTATCTTGGGAGAGGCACAAGAATGAGGATATTTGATGATAATAGCC
TGGCTTTTCTGGCCATCTCTTCCAGCTCTTCCAGACTGTTGGAAATAGTC
ATCCAGACTGCATGGAGGTCCATAGTGGATGACTGAGTGTAAACCTTTAC
AGTCTACACCCATGCCAAACGCTACAGAGGCTACTAAAAATCTGACCTTT
CCATCAGCGGCTGAAAAGGAATTAAGGACCCAATCAAGAACATCTGGATC
TGTTTCTGCTGTATACTTAGCGTAAGGCCTAGTTTTGAAGTTTTTATATT
TATCTTTCATTGCATCGTTAAAGGCATCAAAAATCAATGTACTTTGGTCA
ACTCTTCTAGCAAACACAAGAACCTTCTTTGATTTGTAACCATTTAACAT
CATATCATTAACATAATTTTTGAATATTAAGCTTGGATCCTTGATCTCAG
ATTTTAATACAAAATATCTAATGTTGTCTTTGTTTGGTATTTTTCTAATG
ATCTTTGGTGAATTCAAGCCTAGACTATTTATAACAGCTTTAGTCAATTT
AGTTGTTGCTGTAGCTGTTAAGGCAGCCATTGGGACAGGATGGGTCAACA
GGGACCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043858-exon-sc0004670-1491911889:2035..4389 | TCONS_00043858-exon-sc0004670-1491911889:2035..4389 | Clytia hemisphaerica | exon |
| TCONS_00043858-exon-sc0004670-1510915933:2035..4389 | TCONS_00043858-exon-sc0004670-1510915933:2035..4389 | Clytia hemisphaerica | exon |
| TCONS_00043858-exon-sc0004670-1575043694:2035..4389 | TCONS_00043858-exon-sc0004670-1575043694:2035..4389 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004670 | supercontig | sc0004670:2035..4389 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
