TCONS_00043856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043856
Unique NameTCONS_00043856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043856 ID=TCONS_00043856|Name=TCONS_00043856|organism=Clytia hemisphaerica|type=transcript|length=485bp
GTCCTGGTGTTTCTTCAGCGTTGTTTGGATTATGGCTGCCAGTACCTTCT
GCGTTTTGACCTGGGTTGGCTGAGTCACTGGGATCACCTCTGACTATGAA
GTTTGCACCACATAGAGCATTTTCAAGGATCGGAAACTTGCCGTCCTCCG
GGAATTCTGATTGGGGCGATTGGGCATCCTCCCAATCCTCGGTAATGAAC
AATCCAACTGAGTTCAACTAGAATGAACAAGGAGAATGAATTAGCCTTCA
ACCAACTTCCTTGCTTCNATTTTCAAGGATCGGAAACTTGCCGTCCTCCG
GGAATTCTGATTGGGGCGATTGGGCATCCTCCCAATCCTCGGTAATGAAC
AATCCAACTGCGTTCAACTAAAATGAACAAGGAGAATGAATTAGCCTTCA
ACCAACTTCCttgcttcatttttatttataattcGATAATTCTGACAGAA
ATCCTTGAACAGAAATGAGTCCatggtaaaaaata
Run BLAST on NCBI

transcript from alignment at sc0004668:130..614

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043856 ID=TCONS_00043856|Name=TCONS_00043856|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0004668:130..614 (Clytia hemisphaerica)
tattttttaccatGGACTCATTTCTGTTCAAGGATTTCTGTCAGAATTAT
CgaattataaataaaaatgaagcaaGGAAGTTGGTTGAAGGCTAATTCAT
TCTCCTTGTTCATTTTAGTTGAACGCAGTTGGATTGTTCATTACCGAGGA
TTGGGAGGATGCCCAATCGCCCCAATCAGAATTCCCGGAGGACGGCAAGT
TTCCGATCCTTGAAAATNGAAGCAAGGAAGTTGGTTGAAGGCTAATTCAT
TCTCCTTGTTCATTCTAGTTGAACTCAGTTGGATTGTTCATTACCGAGGA
TTGGGAGGATGCCCAATCGCCCCAATCAGAATTCCCGGAGGACGGCAAGT
TTCCGATCCTTGAAAATGCTCTATGTGGTGCAAACTTCATAGTCAGAGGT
GATCCCAGTGACTCAGCCAACCCAGGTCAAAACGCAGAAGGTACTGGCAG
CCATAATCCAAACAACGCTGAAGAAACACCAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027526XLOC_027526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043856-exon-sc0004668-1491911889:130..614TCONS_00043856-exon-sc0004668-1491911889:130..614Clytia hemisphaericaexon
TCONS_00043856-exon-sc0004668-1510915933:130..614TCONS_00043856-exon-sc0004668-1510915933:130..614Clytia hemisphaericaexon
TCONS_00043856-exon-sc0004668-1575043694:130..614TCONS_00043856-exon-sc0004668-1575043694:130..614Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004668supercontigsc0004668:130..614 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337883	0	0.145542	0	0.785651	0	0.213219	0.1844	1.23071	0	1.149	0.687034	0.21185	0.422523	0.393742	0.249887	0.22334	0.123301	0.944815	0.154103	0.160348	0.22445	0.495862	0.178188	0.338525	0.671613	0.705029	0.376213	0.174653	0.168452
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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