TCONS_00043851 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043851
Unique NameTCONS_00043851
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043851 ID=TCONS_00043851|Name=TCONS_00043851|organism=Clytia hemisphaerica|type=transcript|length=572bp
aaatcaacaaaaacagcaTGCATGCGTTCCCCAGTGATTTTTGCTTCTTG
AAAGTCATTAATTAATTGAAATAGATTGTCAATGGTGGACCTGTTTTTCC
TAAAACCTGATTGTTCATTATTTAATATATTATTGGTTTCAGCCCAATTG
TATATTCTATCTGCTAtgatcttctcaaaaattttgccaattGTAGGTAG
GAGACTAATTGGTCTGTGTTCAGATATTTTGATGGTATTCACTTTCTTTG
ggatcatttttatttttgcagTTTTGAGCTGGGAAGGAAAGACAGAGTTG
TTAAGCCAGTCGTTAAAGAGAGAGGTGAGACAAGGAGCTATTTGTTCAGA
AATAGTATggagaagtttgtttttgatcCCATCATCACCTGGGGCTTTGT
TGGGTTTAAGGCCCTTCAAAACATCCATAACCTCAGACAGTATGATTGGA
GTATCAACAACATATTTAGTCAAATTAGAAGAAAAACGATAATAAATGGA
GTTATATTCTCTGAGATGGAGTTGAGTGTTGTTAAACCAATAGTCTACTA
AATATTTATGTCTAATGTCTTT
Run BLAST on NCBI

protein sequence of TCONS_00043851-protein

>TCONS_00043851-protein ID=TCONS_00043851-protein|Name=TCONS_00043851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
KDIRHKYLVDYWFNNTQLHLREYNSIYYRFSSNLTKYVVDTPIILSEVMD
VLKGLKPNKAPGDDGIKNKLLHTISEQIAPCLTSLFNDWLNNSVFPSQLK
TAKIKMIPKKVNTIKISEHRPISLLPTIGKIFEKIIADRIYNWAETNNIL
NNEQSGFRKNRSTIDNLFQLINDFQEAKITGERMHAVFVD
Run BLAST on NCBI

transcript from alignment at sc0004664:3833..4404

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043851 ID=TCONS_00043851|Name=TCONS_00043851|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at sc0004664:3833..4404 (Clytia hemisphaerica)
AAAGACATTAGACATAAATATTTAGTAGACTATTGGTTTAACAACACTCA
ACTCCATCTCAGAGAATATAACTCCATTTATTATCGTTTTTCTTCTAATT
TGACTAAATATGTTGTTGATACTCCAATCATACTGTCTGAGGTTATGGAT
GTTTTGAAGGGCCTTAAACCCAACAAAGCCCCAGGTGATGATGGgatcaa
aaacaaacttctccATACTATTTCTGAACAAATAGCTCCTTGTCTCACCT
CTCTCTTTAACGACTGGCTTAACAACTCTGTCTTTCCTTCCCAGCTCAAA
ActgcaaaaataaaaatgatccCAAAGAAAGTGAATACCATCAAAATATC
TGAACACAGACCAATTAGTCTCCTACCTACaattggcaaaatttttgaga
agatcaTAGCAGATAGAATATACAATTGGGCTGAAACCAATAATATATTA
AATAATGAACAATCAGGTTTTAGGAAAAACAGGTCCACCATTGACAATCT
ATTTCAATTAATTAATGACTTTCAAGAAGCAAAAATCACTGGGGAACGCA
TGCAtgctgtttttgttgattt

Coding sequence (CDS) from alignment at sc0004664:3833..4404

>TCONS_00043851 ID=TCONS_00043851|Name=TCONS_00043851|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at sc0004664:3833..4404 (Clytia hemisphaerica)
AAAGACATTAGACATAAATATTTAGTAGACTATTGGTTTAACAACACTCA
ACTCCATCTCAGAGAATATAACTCCATTTATTATCGTTTTTCTTCTAATT
TGACTAAATATGTTGTTGATACTCCAATCATACTGTCTGAGGTTATGGAT
GTTTTGAAGGGCCTTAAACCCAACAAAGCCCCAGGTGATGATGGgatcaa
aaacaaacttctccATACTATTTCTGAACAAATAGCTCCTTGTCTCACCT
CTCTCTTTAACGACTGGCTTAACAACTCTGTCTTTCCTTCCCAGCTCAAA
ActgcaaaaataaaaatgatccCAAAGAAAGTGAATACCATCAAAATATC
TGAACACAGACCAATTAGTCTCCTACCTACaattggcaaaatttttgaga
agatcaTAGCAGATAGAATATACAATTGGGCTGAAACCAATAATATATTA
AATAATGAACAATCAGGTTTTAGGAAAAACAGGTCCACCATTGACAATCT
ATTTCAATTAATTAATGACTTTCAAGAAGCAAAAATCACTGGGGAACGCA
TGCAtgctgtttttgttgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027521XLOC_027521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043851-exon-sc0004664-1491911889:3833..4404TCONS_00043851-exon-sc0004664-1491911889:3833..4404Clytia hemisphaericaexon
TCONS_00043851-exon-sc0004664-1510915933:3833..4404TCONS_00043851-exon-sc0004664-1510915933:3833..4404Clytia hemisphaericaexon
TCONS_00043851-exon-sc0004664-1575043694:3833..4404TCONS_00043851-exon-sc0004664-1575043694:3833..4404Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043851-proteinTCONS_00043851-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004664supercontigsc0004664:3833..4404 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0953069	0	0	0	0	0	0.352906	0	0	0	0.0900779	0.325002	0.405021	0.658043	0.643835	0.167783	0.445839	0.528744	1.40939	3.11293	1.87417	0.336182	0.815036	0.339302	0.724163	1.95435	0.958308	0.108478	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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