|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043842 ID=TCONS_00043842|Name=TCONS_00043842|organism=Clytia hemisphaerica|type=transcript|length=1703bp
CTGAActtacaaaaaatcaaatccCTCGGACTGACAAATACTTCATTGAT
TATTTAGGGGATCCATTATGTAACTCTATTCGTTTCAGGCAGATTACACC
CACTGCTGTACTTAAACTTATCAATGATCTTGATGCTCAGAAGGCATCAG
GGCCTTCAAGTATTCCTACATCCTTCCTAAAAATGATATCTCCAACTGCA
AGCACCATATTATCTCACATCTTTAACGTCAACATTAAAGAAGGCATCTA
CCCTGATTGTCTAAAAAAAGCTAACATAAAACCTTTACACAAGAAAGACT
CAAAACTAGATATTGGCAGTTACAGACCCATTTCTCTGCTATccaacata
aataaaatcttcgaaaaacttCTTCATTTCAGACTAGTCAAATTCTTCGA
AAACAACAACATCTTTAGTGAAAAGCAATTCGGCACTAACCATGCTGTGA
TTGCCCTTACTGAAGTTGTGAGATCAGCATTAGATAATGGTAATTTTGCA
GCTGGAGTTTTCATTGATCTTAAGAAGGCTTTTGATACAGTAGAGCATAC
CATCCTGCTACATAAACTGGTTCATTATGGCATCAGAGGACCAGCTCTTG
CTTTACTCAGGTCTTATCTCTCTAATCGTACTCACTGTGTCGATATAAGA
AACACACATTCTGGTCATGTCATCATCAAACATGGTGTCCCTCAAGGATC
TGTTTCGGGCCCCCTGTTATTCatcatttatattaatgatctcCATCGCT
CCCTAGAAAACTCAGTAACTATTCATTTCGCTGACGACACTAGTCTTAAT
ATTTGCTGTGATAAATCTATAAAACATCTGAACAGAAAGCTTAACAGGGA
TCTTGCTCTATTGGTCCATTGGCTGAGAGCAAACAAAATATGCCTTAACG
CctcaaaaactgaaataatCCTACTTAGAAGTCCCAGGAACACTTTTACT
AAACATCTTAATTTCAGACTCAGTGGACAAAAACTTCATCTATCAAGCAA
AGCTAAATATCTTGGAATCCTGCTAGACGAGCATCTTTCTTGGGAACCTC
AAATTCACAGTGTCTCGAACAAACTTTCTAGAACTGTTGGCTTCCTGTCA
AAACTCAGACATTTTGTGGACTTCAAAACACTTCTTTCTGTCTACTATGC
TTTATTTGACTCACATATAAActattgtcttcaaactttagGTCATACCA
CTCAAGCCTCTTTCGAAAAAATTGaagttcttcaaaataaagcctTGAGA
GTTATACACTTTAAATATAGCAGACACTCGGCTCGCCCACTCTTTATTAG
ATCTTCTATTTTGCCAGTCAAAAAGCAACTCAAAGTAAAGAACTGCCTTT
TTGCTCTCGACCATATTCAAAATAATCTACCTAAATACTTTTCAAACTAC
CTTAGATACTCTCCTGTACACGAAGGTACAAGACAGTCACCAAAGAAACT
TGAACCACCAACAACCAATACGGTAAAGTATGGCTCTTACAGTGTAGCTT
CCCTGATAACTAAGGACTGGAACGAACTCCATACCAAGGTTTTGATTCAA
GACTTTAGCAAATGCTCTAAATCAAACtcttaaaaaacatttacatcGTT
TTAATTTAACTAAACTTGCATCTGATTAGACTCTGGCTATTTACTTTCCT
CTCTCTTTGTTCTTCTTTATTCTTTTGGTCCtttctttattattattttt
ttt Run BLAST on NCBI protein sequence of TCONS_00043842-protein >TCONS_00043842-protein ID=TCONS_00043842-protein|Name=TCONS_00043842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp
ELTKNQIPRTDKYFIDYLGDPLCNSIRFRQITPTAVLKLINDLDAQKASG
PSSIPTSFLKMISPTASTILSHIFNVNIKEGIYPDCLKKANIKPLHKKDS
KLDIGSYRPISLLSNINKIFEKLLHFRLVKFFENNNIFSEKQFGTNHAVI
ALTEVVRSALDNGNFAAGVFIDLKKAFDTVEHTILLHKLVHYGIRGPALA
LLRSYLSNRTHCVDIRNTHSGHVIIKHGVPQGSVSGPLLFIIYINDLHRS
LENSVTIHFADDTSLNICCDKSIKHLNRKLNRDLALLVHWLRANKICLNA
SKTEIILLRSPRNTFTKHLNFRLSGQKLHLSSKAKYLGILLDEHLSWEPQ
IHSVSNKLSRTVGFLSKLRHFVDFKTLLSVYYALFDSHINYCLQTLGHTT
QASFEKIEVLQNKALRVIHFKYSRHSARPLFIRSSILPVKKQLKVKNCLF
ALDHIQNNLPKYFSNYLRYSPVHEGTRQSPKKLEPPTTNTVKYGSYSVAS
LITKDWNELHTKVLIQDFSKCSKSNS Run BLAST on NCBI transcript from alignment at sc0004650:809..2511 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043842 ID=TCONS_00043842|Name=TCONS_00043842|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at sc0004650:809..2511 (Clytia hemisphaerica)
aaaaaaaataataataaagaaaGGACCAAAAGAATAAAGAAGAACAAAGA
GAGAGGAAAGTAAATAGCCAGAGTCTAATCAGATGCAAGTTTAGTTAAAT
TAAAACgatgtaaatgttttttaagaGTTTGATTTAGAGCATTTGCTAAA
GTCTTGAATCAAAACCTTGGTATGGAGTTCGTTCCAGTCCTTAGTTATCA
GGGAAGCTACACTGTAAGAGCCATACTTTACCGTATTGGTTGTTGGTGGT
TCAAGTTTCTTTGGTGACTGTCTTGTACCTTCGTGTACAGGAGAGTATCT
AAGGTAGTTTGAAAAGTATTTAGGTAGATTATTTTGAATATGGTCGAGAG
CAAAAAGGCAGTTCTTTACTTTGAGTTGCTTTTTGACTGGCAAAATAGAA
GATCTAATAAAGAGTGGGCGAGCCGAGTGTCTGCTATATTTAAAGTGTAT
AACTCTCAaggctttattttgaagaacttCAATTTTTTCGAAAGAGGCTT
GAGTGGTATGACctaaagtttgaagacaatagTTTATATGTGAGTCAAAT
AAAGCATAGTAGACAGAAAGAAGTGTTTTGAAGTCCACAAAATGTCTGAG
TTTTGACAGGAAGCCAACAGTTCTAGAAAGTTTGTTCGAGACACTGTGAA
TTTGAGGTTCCCAAGAAAGATGCTCGTCTAGCAGGATTCCAAGATATTTA
GCTTTGCTTGATAGATGAAGTTTTTGTCCACTGAGTCTGAAATTAAGATG
TTTAGTAAAAGTGTTCCTGGGACTTCTAAGTAGGattatttcagtttttg
agGCGTTAAGGCATATTTTGTTTGCTCTCAGCCAATGGACCAATAGAGCA
AGATCCCTGTTAAGCTTTCTGTTCAGATGTTTTATAGATTTATCACAGCA
AATATTAAGACTAGTGTCGTCAGCGAAATGAATAGTTACTGAGTTTTCTA
GGGAGCGATGgagatcattaatataaatgatGAATAACAGGGGGCCCGAA
ACAGATCCTTGAGGGACACCATGTTTGATGATGACATGACCAGAATGTGT
GTTTCTTATATCGACACAGTGAGTACGATTAGAGAGATAAGACCTGAGTA
AAGCAAGAGCTGGTCCTCTGATGCCATAATGAACCAGTTTATGTAGCAGG
ATGGTATGCTCTACTGTATCAAAAGCCTTCTTAAGATCAATGAAAACTCC
AGCTGCAAAATTACCATTATCTAATGCTGATCTCACAACTTCAGTAAGGG
CAATCACAGCATGGTTAGTGCCGAATTGCTTTTCACTAAAGATGTTGTTG
TTTTCGAAGAATTTGACTAGTCTGAAATGAAGaagtttttcgaagatttt
atttatgttggATAGCAGAGAAATGGGTCTGTAACTGCCAATATCTAGTT
TTGAGTCTTTCTTGTGTAAAGGTTTTATGTTAGCTTTTTTTAGACAATCA
GGGTAGATGCCTTCTTTAATGTTGACGTTAAAGATGTGAGATAATATGGT
GCTTGCAGTTGGAGATATCATTTTTAGGAAGGATGTAGGAATACTTGAAG
GCCCTGATGCCTTCTGAGCATCAAGATCATTGATAAGTTTAAGTACAGCA
GTGGGTGTAATCTGCCTGAAACGAATAGAGTTACATAATGGATCCCCTAA
ATAATCAATGAAGTATTTGTCAGTCCGAGggatttgattttttgtaagTT
CAG Coding sequence (CDS) from alignment at sc0004650:809..2511 >TCONS_00043842 ID=TCONS_00043842|Name=TCONS_00043842|organism=Clytia hemisphaerica|type=CDS|length=1581bp|location=Sequence derived from alignment at sc0004650:809..2511 (Clytia hemisphaerica)
ttaagaGTTTGATTTAGAGCATTTGCTAAAGTCTTGAATCAAAACCTTGG
TATGGAGTTCGTTCCAGTCCTTAGTTATCAGGGAAGCTACACTGTAAGAG
CCATACTTTACCGTATTGGTTGTTGGTGGTTCAAGTTTCTTTGGTGACTG
TCTTGTACCTTCGTGTACAGGAGAGTATCTAAGGTAGTTTGAAAAGTATT
TAGGTAGATTATTTTGAATATGGTCGAGAGCAAAAAGGCAGTTCTTTACT
TTGAGTTGCTTTTTGACTGGCAAAATAGAAGATCTAATAAAGAGTGGGCG
AGCCGAGTGTCTGCTATATTTAAAGTGTATAACTCTCAaggctttatttt
gaagaacttCAATTTTTTCGAAAGAGGCTTGAGTGGTATGACctaaagtt
tgaagacaatagTTTATATGTGAGTCAAATAAAGCATAGTAGACAGAAAG
AAGTGTTTTGAAGTCCACAAAATGTCTGAGTTTTGACAGGAAGCCAACAG
TTCTAGAAAGTTTGTTCGAGACACTGTGAATTTGAGGTTCCCAAGAAAGA
TGCTCGTCTAGCAGGATTCCAAGATATTTAGCTTTGCTTGATAGATGAAG
TTTTTGTCCACTGAGTCTGAAATTAAGATGTTTAGTAAAAGTGTTCCTGG
GACTTCTAAGTAGGattatttcagtttttgagGCGTTAAGGCATATTTTG
TTTGCTCTCAGCCAATGGACCAATAGAGCAAGATCCCTGTTAAGCTTTCT
GTTCAGATGTTTTATAGATTTATCACAGCAAATATTAAGACTAGTGTCGT
CAGCGAAATGAATAGTTACTGAGTTTTCTAGGGAGCGATGgagatcatta
atataaatgatGAATAACAGGGGGCCCGAAACAGATCCTTGAGGGACACC
ATGTTTGATGATGACATGACCAGAATGTGTGTTTCTTATATCGACACAGT
GAGTACGATTAGAGAGATAAGACCTGAGTAAAGCAAGAGCTGGTCCTCTG
ATGCCATAATGAACCAGTTTATGTAGCAGGATGGTATGCTCTACTGTATC
AAAAGCCTTCTTAAGATCAATGAAAACTCCAGCTGCAAAATTACCATTAT
CTAATGCTGATCTCACAACTTCAGTAAGGGCAATCACAGCATGGTTAGTG
CCGAATTGCTTTTCACTAAAGATGTTGTTGTTTTCGAAGAATTTGACTAG
TCTGAAATGAAGaagtttttcgaagattttatttatgttggATAGCAGAG
AAATGGGTCTGTAACTGCCAATATCTAGTTTTGAGTCTTTCTTGTGTAAA
GGTTTTATGTTAGCTTTTTTTAGACAATCAGGGTAGATGCCTTCTTTAAT
GTTGACGTTAAAGATGTGAGATAATATGGTGCTTGCAGTTGGAGATATCA
TTTTTAGGAAGGATGTAGGAATACTTGAAGGCCCTGATGCCTTCTGAGCA
TCAAGATCATTGATAAGTTTAAGTACAGCAGTGGGTGTAATCTGCCTGAA
ACGAATAGAGTTACATAATGGATCCCCTAAATAATCAATGAAGTATTTGT
CAGTCCGAGggatttgattttttgtaagTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043842-exon-sc0004650-1491911889:809..2511 | TCONS_00043842-exon-sc0004650-1491911889:809..2511 | Clytia hemisphaerica | exon |
| TCONS_00043842-exon-sc0004650-1510915933:809..2511 | TCONS_00043842-exon-sc0004650-1510915933:809..2511 | Clytia hemisphaerica | exon |
| TCONS_00043842-exon-sc0004650-1575043694:809..2511 | TCONS_00043842-exon-sc0004650-1575043694:809..2511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004650 | supercontig | sc0004650:809..2511 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
