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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043841 ID=TCONS_00043841|Name=TCONS_00043841|organism=Clytia hemisphaerica|type=transcript|length=769bp
NATCCACCCCCAATACCACCTGCTTCAAGGCAGTTATCTACGCCTGTTGA
ACCATATCAACAACATCAATATGGATGGATCAGTGGTGGTATATTTCCAG
AACAATCAGGAATTTTAGTGAGGGATGGTGCAGAATCACCGAACCCAAGT
CCAACCAAAAGTGCTTCAATACCAAGAGACTTAGGAGCTCAATCTAGAGA
TTATTATAGTAGACAGGATTCACCGCCACAACAGTCACCAAAGAGACCAC
CAAAGTCTTTTTCACCAACTGAAAAAATGGAGCTTTggaAATGTCAGGGA
AGTTTCTTATTTGTTTGTACTGCAATGAGTCATTCGGGGgcattttgagt
tttttaaacTACACTTTTTTGTCGTATGAGAATTGATACATGTTTTTGTG
AGAATTGATACACTTTTTTGTGAGAATAACTTCTTTGAGAAGACCAGTAT
ACCAGTGTGATAGCTTGCATGCAAGGACAAAATACAAATCCCGTCCCTCA
ACCTAACTCCCTCTTTTTATAAAACATGTACAGACCATTTTTCATGACTT
TTTAGCGTACGGGTATCGGGTGCTGCCCCTCCTGAATTCActcaaatttt
ggtaaaaacagcctttttagtggaatAACAATAGTCAAAGAGCTAACGGA
TGCTgtcctgcctttctaaaatattgaCTGGtgtatgattttctttttct
taaatgCCCAAAACTCAAGATTATTAACTTTTAGTATTCATTCATAATAA
ACCTCACGTAGTATATTGG Run BLAST on NCBI protein sequence of TCONS_00043841-protein >TCONS_00043841-protein ID=TCONS_00043841-protein|Name=TCONS_00043841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
XPPPIPPASRQLSTPVEPYQQHQYGWISGGIFPEQSGILVRDGAESPNPS
PTKSASIPRDLGAQSRDYYSRQDSPPQQSPKRPPKSFSPTEKMELWKCQG
SFLFVCTAMSHSGAF Run BLAST on NCBI transcript from alignment at sc0004649:1976..3401+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043841 ID=TCONS_00043841|Name=TCONS_00043841|organism=Clytia hemisphaerica|type=transcript|length=1426bp|location=Sequence derived from alignment at sc0004649:1976..3401+ (Clytia hemisphaerica)
NATCCACCCCCAATACCACCTGCTTCAAGGCAGTTATCTACGGTAAGTTT
AGTGGTTTCTAAAAACTTTTTATAGTTAAATTTACCTTTGGTGTATCTAT
TATGAATCTTCTAGAAATGTTTGATAGTATTCCTGCGCCATCTAATTTTA
CTtagcttttaaaaataaaagatttaacATTTTAGGAACTCATTTTTGAG
ATTATATATATCTAGTTGTtgccaaaaagtttttttgagttagtttcatt
ttcattcaggAACATGAAATTTTTAAGACAATAATTTAATGAATCACATT
TTTTCAGCCTGTTGAACCATATCAACAACATCAATATGGATGGATCAGTG
GTGGTATATTTCCAGAACAATCAGGAATTTTAGTGAGGGATGGTGCAGAA
TCACCGAACCCAAGTCCAACCAAAAGTGCTTCAATACCAAGAGACTTAGG
AGCTCAATCTAGAGATTATTATAGTAGACAGGATTCACCGCCACAACAGT
CACCAAAGAGACCACCAAAGTCTTTTTCACCAACTGAAAAAATGGAGCTT
TGTGAGTACTGTTTTCGAGAATTCCCCAAGGGAGCAGTTTTATTTGACCA
TATGATGAAATGTGACAAAAGATATCAGAGGGATAACAGATGATTTTGTA
ATCATTCAAAAAATTcaacattattttttttataaatgtttccTATAAAT
TTGTACATAGTAGATTTGTCcataatttttgttttacttttagTGCATTG
GTTGAAAATGAAACTAGCATCATTATTCAAAGAGATTACAAGATTAAACT
TTTTATTCTACTAAGGGACATGTTTGATATTATAACAGCATGGTTTTCCT
TTTATAGATATAGACAAGTCATGTCAATTATGATATTAAATTACACACCA
ATTATTGTTCAGTCAGGCtgatttaattcttttttttttttagggaAATG
TCAGGGAAGTTTCTTATTTGTTTGTACTGCAATGAGTCATTCGGGGgcat
tttgagttttttaaacTACACTTTTTTGTCGTATGAGAATTGATACATGT
TTTTGTGAGAATTGATACACTTTTTTGTGAGAATAACTTCTTTGAGAAGA
CCAGTATACCAGTGTGATAGCTTGCATGCAAGGACAAAATACAAATCCCG
TCCCTCAACCTAACTCCCTCTTTTTATAAAACATGTACAGACCATTTTTC
ATGACTTTTTAGCGTACGGGTATCGGGTGCTGCCCCTCCTGAATTCActc
aaattttggtaaaaacagcctttttagtggaatAACAATAGTCAAAGAGC
TAACGGATGCTgtcctgcctttctaaaatattgaCTGGtgtatgattttc
tttttcttaaatgCCCAAAACTCAAGATTATTAACTTTTAGTATTCATTC
ATAATAAACCTCACGTAGTATATTGG Coding sequence (CDS) from alignment at sc0004649:1976..3401+ >TCONS_00043841 ID=TCONS_00043841|Name=TCONS_00043841|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0004649:1976..3401+ (Clytia hemisphaerica)
NATCCACCCCCAATACCACCTGCTTCAAGGCAGTTATCTACGCCTGTTGA
ACCATATCAACAACATCAATATGGATGGATCAGTGGTGGTATATTTCCAG
AACAATCAGGAATTTTAGTGAGGGATGGTGCAGAATCACCGAACCCAAGT
CCAACCAAAAGTGCTTCAATACCAAGAGACTTAGGAGCTCAATCTAGAGA
TTATTATAGTAGACAGGATTCACCGCCACAACAGTCACCAAAGAGACCAC
CAAAGTCTTTTTCACCAACTGAAAAAATGGAGCTTTggaAATGTCAGGGA
AGTTTCTTATTTGTTTGTACTGCAATGAGTCATTCGGGGgcattttgaNA
TCCACCCCCAATACCACCTGCTTCAAGGCAGTTATCTACGCCTGTTGAAC
CATATCAACAACATCAATATGGATGGATCAGTGGTGGTATATTTCCAGAA
CAATCAGGAATTTTAGTGAGGGATGGTGCAGAATCACCGAACCCAAGTCC
AACCAAAAGTGCTTCAATACCAAGAGACTTAGGAGCTCAATCTAGAGATT
ATTATAGTAGACAGGATTCACCGCCACAACAGTCACCAAAGAGACCACCA
AAGTCTTTTTCACCAACTGAAAAAATGGAGCTTTggaAATGTCAGGGAAG
TTTCTTATTTGTTTGTACTGCAATGAGTCATTCGGGGgcattttgaNATC
CACCCCCAATACCACCTGCTTCAAGGCAGTTATCTACGCCTGTTGAACCA
TATCAACAACATCAATATGGATGGATCAGTGGTGGTATATTTCCAGAACA
ATCAGGAATTTTAGTGAGGGATGGTGCAGAATCACCGAACCCAAGTCCAA
CCAAAAGTGCTTCAATACCAAGAGACTTAGGAGCTCAATCTAGAGATTAT
TATAGTAGACAGGATTCACCGCCACAACAGTCACCAAAGAGACCACCAAA
GTCTTTTTCACCAACTGAAAAAATGGAGCTTTggaAATGTCAGGGAAGTT
TCTTATTTGTTTGTACTGCAATGAGTCATTCGGGGgcattttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043841-exon-sc0004649-1491911889:1976..2017 | TCONS_00043841-exon-sc0004649-1491911889:1976..2017 | Clytia hemisphaerica | exon |
| TCONS_00043841-exon-sc0004649-1510915933:1976..2017 | TCONS_00043841-exon-sc0004649-1510915933:1976..2017 | Clytia hemisphaerica | exon |
| TCONS_00043841-exon-sc0004649-1575043694:1976..2017 | TCONS_00043841-exon-sc0004649-1575043694:1976..2017 | Clytia hemisphaerica | exon |
| TCONS_00043841-exon-sc0004649-1491911889:2283..2526 | TCONS_00043841-exon-sc0004649-1491911889:2283..2526 | Clytia hemisphaerica | exon |
| TCONS_00043841-exon-sc0004649-1510915933:2283..2526 | TCONS_00043841-exon-sc0004649-1510915933:2283..2526 | Clytia hemisphaerica | exon |
| TCONS_00043841-exon-sc0004649-1575043694:2283..2526 | TCONS_00043841-exon-sc0004649-1575043694:2283..2526 | Clytia hemisphaerica | exon |
| TCONS_00043841-exon-sc0004649-1491911889:2919..3401 | TCONS_00043841-exon-sc0004649-1491911889:2919..3401 | Clytia hemisphaerica | exon |
| TCONS_00043841-exon-sc0004649-1510915933:2919..3401 | TCONS_00043841-exon-sc0004649-1510915933:2919..3401 | Clytia hemisphaerica | exon |
| TCONS_00043841-exon-sc0004649-1575043694:2919..3401 | TCONS_00043841-exon-sc0004649-1575043694:2919..3401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004649 | supercontig | sc0004649:1976..3401 + |
Blast
The following BLAST results are available for this feature:
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