TCONS_00043840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043840
Unique NameTCONS_00043840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043840 ID=TCONS_00043840|Name=TCONS_00043840|organism=Clytia hemisphaerica|type=transcript|length=1162bp
NNATCCACCCCCAATACCACCTGCTTCAAGGCAGTTATCTACGCCTGTTG
AACCATATCAACAACATCAATATGGATGGATCAGTGGTGGTATATTTCCA
GAACAATCAGGAATTTTAGTGAGGGATGGTGCAGAATCACCGAACCCAAG
TCCAACCAAAAGTGCTTCAATACCAAGAGACTTAGGAGCTCAATCTAGAG
ATTATTATAGTAGACAGGATTCACCGCCACAACAGTCACCAAAGAGACCA
CCAAAGTCTTTTTCACCAACTGAAAAAATGGAGCTTTGTGAGTACTGTTT
TCGAGAATTCCCCAAGGGAGCAGTTTTATTTGACCATATGATGAAATGTG
ACAAAAGATATCAGAGGGATAACAGATGATTTTGTAATCATTCAAAAAAT
TcaacattattttttttataaatgtttccTATAAATTTGTACATAGTAGA
TTTGTCcataatttttgttttacttttagTGCATTGGTTGAAAATGAAAC
TAGCATCATTATTCAAAGAGATTACAAGATTAAACTTTTTATTCTACTAA
GGGACATGTTTGATATTATAACAGCATGGTTTTCCTTTTATAGATATAGA
CAAGTCATGTCAATTATGATATTAAATTACACACCAATTATTGTTCAGTC
AGGCtgatttaattcttttttttttttagggaAATGTCAGGGAAGTTTCT
TATTTGTTTGTACTGCAATGAGTCATTCGGGGgcattttgagttttttaa
acTACACTTTTTTGTCGTATGAGAATTGATACATGTTTTTGTGAGAATTG
ATACACTTTTTTGTGAGAATAACTTCTTTGAGAAGACCAGTATACCAGTG
TGATAGCTTGCATGCAAGGACAAAATACAAATCCCGTCCCTCAACCTAAC
TCCCTCTTTTTATAAAACATGTACAGACCATTTTTCATGACTTTTTAGCG
TACGGGTATCGGGTGCTGCCCCTCCTGAATTCActcaaattttggtaaaa
acagcctttttagtggaatAACAATAGTCAAAGAGCTAACGGATGCTgtc
ctgcctttctaaaatattgaCTGGtgtatgattttctttttcttaaatgC
CCAAAACTCAAGATTATTAACTTTTAGTATTCATTCATAATAAACCTCAC
GTAGTATATTGG
Run BLAST on NCBI

transcript from alignment at sc0004649:1975..3401+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043840 ID=TCONS_00043840|Name=TCONS_00043840|organism=Clytia hemisphaerica|type=transcript|length=1427bp|location=Sequence derived from alignment at sc0004649:1975..3401+ (Clytia hemisphaerica)
NNATCCACCCCCAATACCACCTGCTTCAAGGCAGTTATCTACGGTAAGTT
TAGTGGTTTCTAAAAACTTTTTATAGTTAAATTTACCTTTGGTGTATCTA
TTATGAATCTTCTAGAAATGTTTGATAGTATTCCTGCGCCATCTAATTTT
ACTtagcttttaaaaataaaagatttaacATTTTAGGAACTCATTTTTGA
GATTATATATATCTAGTTGTtgccaaaaagtttttttgagttagtttcat
tttcattcaggAACATGAAATTTTTAAGACAATAATTTAATGAATCACAT
TTTTTCAGCCTGTTGAACCATATCAACAACATCAATATGGATGGATCAGT
GGTGGTATATTTCCAGAACAATCAGGAATTTTAGTGAGGGATGGTGCAGA
ATCACCGAACCCAAGTCCAACCAAAAGTGCTTCAATACCAAGAGACTTAG
GAGCTCAATCTAGAGATTATTATAGTAGACAGGATTCACCGCCACAACAG
TCACCAAAGAGACCACCAAAGTCTTTTTCACCAACTGAAAAAATGGAGCT
TTGTGAGTACTGTTTTCGAGAATTCCCCAAGGGAGCAGTTTTATTTGACC
ATATGATGAAATGTGACAAAAGATATCAGAGGGATAACAGATGATTTTGT
AATCATTCAAAAAATTcaacattattttttttataaatgtttccTATAAA
TTTGTACATAGTAGATTTGTCcataatttttgttttacttttagTGCATT
GGTTGAAAATGAAACTAGCATCATTATTCAAAGAGATTACAAGATTAAAC
TTTTTATTCTACTAAGGGACATGTTTGATATTATAACAGCATGGTTTTCC
TTTTATAGATATAGACAAGTCATGTCAATTATGATATTAAATTACACACC
AATTATTGTTCAGTCAGGCtgatttaattcttttttttttttagggaAAT
GTCAGGGAAGTTTCTTATTTGTTTGTACTGCAATGAGTCATTCGGGGgca
ttttgagttttttaaacTACACTTTTTTGTCGTATGAGAATTGATACATG
TTTTTGTGAGAATTGATACACTTTTTTGTGAGAATAACTTCTTTGAGAAG
ACCAGTATACCAGTGTGATAGCTTGCATGCAAGGACAAAATACAAATCCC
GTCCCTCAACCTAACTCCCTCTTTTTATAAAACATGTACAGACCATTTTT
CATGACTTTTTAGCGTACGGGTATCGGGTGCTGCCCCTCCTGAATTCAct
caaattttggtaaaaacagcctttttagtggaatAACAATAGTCAAAGAG
CTAACGGATGCTgtcctgcctttctaaaatattgaCTGGtgtatgatttt
ctttttcttaaatgCCCAAAACTCAAGATTATTAACTTTTAGTATTCATT
CATAATAAACCTCACGTAGTATATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027511XLOC_027511Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043840-exon-sc0004649-1491911889:1975..2017TCONS_00043840-exon-sc0004649-1491911889:1975..2017Clytia hemisphaericaexon
TCONS_00043840-exon-sc0004649-1510915933:1975..2017TCONS_00043840-exon-sc0004649-1510915933:1975..2017Clytia hemisphaericaexon
TCONS_00043840-exon-sc0004649-1575043694:1975..2017TCONS_00043840-exon-sc0004649-1575043694:1975..2017Clytia hemisphaericaexon
TCONS_00043840-exon-sc0004649-1491911889:2283..3401TCONS_00043840-exon-sc0004649-1491911889:2283..3401Clytia hemisphaericaexon
TCONS_00043840-exon-sc0004649-1510915933:2283..3401TCONS_00043840-exon-sc0004649-1510915933:2283..3401Clytia hemisphaericaexon
TCONS_00043840-exon-sc0004649-1575043694:2283..3401TCONS_00043840-exon-sc0004649-1575043694:2283..3401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004649supercontigsc0004649:1975..3401 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.12765	4.69055	5.20014	3.90352	2.00283	2.05883	2.83376	3.20537	2.13451	2.18958	2.32068	1.53279	3.07321	2.5116	2.04279	2.34105	1.60623	1.86911	3.97232	2.86639	1.49143	0.20298	3.0962	3.26689	4.45758	5.81743	4.53558	6.05423	3.23183	3.58868
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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