TCONS_00043783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043783
Unique NameTCONS_00043783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043783 ID=TCONS_00043783|Name=TCONS_00043783|organism=Clytia hemisphaerica|type=transcript|length=801bp
ttttcttcgatttttcatGTTCGAACCCAATACGATGTCGATGCGTTGGT
TTGATGTCGCGGATGCCGATATCTTTGAGCAGATcctcaatttccttttt
gtccTCTTCTTGATCTTCTTCTTTCGTGTCTTCAGCTTGTTCACAGAGTC
CATGAattatgatgttttttcttcttgattcgatgtctcgTTTTTCTCTC
TTCTCCTCTTCTTTTTATTCCGCAACAACAGACTTAAGATTTTCCTTGTG
TGCTTTGGTTATATCAGCGTAGGTTTTACGGGATGACtctttcataaaat
cttttgtctgttgtatctcttcttttatcattttccttgttttggcTTCT
AGGTCGCTCATCTTTTGTGTTAGCATTGTTTCGATGTCGTTGTTGATGAC
TTCTCGGTTTTTGGTCAGttgttttttgagttttttgatttcatcgtcTT
TTTTAGCAATCTGCTCTTGCATCATATGGTACTTGTTTTCTCCGATTTTA
CTTCTTAAGGATCTCGTTATTCGCACACAATTGTGACATACATATTGATT
ATTGTACGTGTTAGCGAATATTTGCAGTTGGTAAAGTGGCAATTGAGTGC
ATTCGTAATGTACCATACGTTGGCAGCTACGGCATTTGAGTCAATTTTGA
TCTTCATCATCAATACACGTAACAAGGGTGCATGTTGCAGTTGTGTTTGC
TGCTTCAATTGGTGGGTCTTGGGTGTTTTTATCGcgatttttgttcatat
ttagcGAATTTCGATGCTTCTTTGAGTTTCcaccatttttttgaaagcgA
T
Run BLAST on NCBI

protein sequence of TCONS_00043783-protein

>TCONS_00043783-protein ID=TCONS_00043783-protein|Name=TCONS_00043783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MVHYECTQLPLYQLQIFANTYNNQYVCHNCVRITRSLRSKIGENKYHMMQ
EQIAKKDDEIKKLKKQLTKNREVINNDIETMLTQKMSDLEAKTRKMIKEE
IQQTKDFMKESSRKTYADITKAHKENLKSVVAE
Run BLAST on NCBI

transcript from alignment at sc0004580:1976..2776

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043783 ID=TCONS_00043783|Name=TCONS_00043783|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at sc0004580:1976..2776 (Clytia hemisphaerica)
ATcgctttcaaaaaaatggtgGAAACTCAAAGAAGCATCGAAATTCgcta
aatatgaacaaaaatcgCGATAAAAACACCCAAGACCCACCAATTGAAGC
AGCAAACACAACTGCAACATGCACCCTTGTTACGTGTATTGATGATGAAG
ATCAAAATTGACTCAAATGCCGTAGCTGCCAACGTATGGTACATTACGAA
TGCACTCAATTGCCACTTTACCAACTGCAAATATTCGCTAACACGTACAA
TAATCAATATGTATGTCACAATTGTGTGCGAATAACGAGATCCTTAAGAA
GTAAAATCGGAGAAAACAAGTACCATATGATGCAAGAGCAGATTGCTAAA
AAAgacgatgaaatcaaaaaactcaaaaaacaaCTGACCAAAAACCGAGA
AGTCATCAACAACGACATCGAAACAATGCTAACACAAAAGATGAGCGACC
TAGAAgccaaaacaaggaaaatgataaaagaagagatacaacagacaaaa
gattttatgaaagaGTCATCCCGTAAAACCTACGCTGATATAACCAAAGC
ACACAAGGAAAATCTTAAGTCTGTTGTTGCGGAATAAAAAGAAGAGGAGA
AGAGAGAAAAAcgagacatcgaatcaagaagaaaaaacatcataatTCAT
GGACTCTGTGAACAAGCTGAAGACACGAAAGAAGAAGATCAAGAAGAgga
caaaaaggaaattgaggATCTGCTCAAAGATATCGGCATCCGCGACATCA
AACCAACGCATCGACATCGTATTGGGTTCGAACatgaaaaatcgaagaaa
a

Coding sequence (CDS) from alignment at sc0004580:1976..2776

>TCONS_00043783 ID=TCONS_00043783|Name=TCONS_00043783|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0004580:1976..2776 (Clytia hemisphaerica)
ATGGTACATTACGAATGCACTCAATTGCCACTTTACCAACTGCAAATATT
CGCTAACACGTACAATAATCAATATGTATGTCACAATTGTGTGCGAATAA
CGAGATCCTTAAGAAGTAAAATCGGAGAAAACAAGTACCATATGATGCAA
GAGCAGATTGCTAAAAAAgacgatgaaatcaaaaaactcaaaaaacaaCT
GACCAAAAACCGAGAAGTCATCAACAACGACATCGAAACAATGCTAACAC
AAAAGATGAGCGACCTAGAAgccaaaacaaggaaaatgataaaagaagag
atacaacagacaaaagattttatgaaagaGTCATCCCGTAAAACCTACGC
TGATATAACCAAAGCACACAAGGAAAATCTTAAGTCTGTTGTTGCGGAAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027458XLOC_027458Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043783-proteinTCONS_00043783-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043783-exon-sc0004580-1491911889:1976..2776TCONS_00043783-exon-sc0004580-1491911889:1976..2776Clytia hemisphaericaexon
TCONS_00043783-exon-sc0004580-1510915933:1976..2776TCONS_00043783-exon-sc0004580-1510915933:1976..2776Clytia hemisphaericaexon
TCONS_00043783-exon-sc0004580-1575043694:1976..2776TCONS_00043783-exon-sc0004580-1575043694:1976..2776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004580supercontigsc0004580:1976..2776 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.48045	4.32908	5.12889	4.67992	3.23927	2.93966	3.10806	3.18872	2.52244	4.36062	2.57396	4.72365	1.71566	2.08248	2.39857	2.50995	1.53669	2.23226	3.06214	3.39039	3.40996	4.78412	1.18205	0.880926	3.16613	3.54683	2.85481	2.21601	3.88634	2.70814
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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