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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043773 ID=TCONS_00043773|Name=TCONS_00043773|organism=Clytia hemisphaerica|type=transcript|length=402bp
GCGATTCTGTGGTAAACACCGAACATATTATTTTACATTTCCAATCATAT
TTTTATAGTGGTAACATCAGATTAACGGTGTCGGATTTTCAAAGGGATTG
ACCATGAAGCAGACTATCGCAATCATCTTACTCGTTGCAGTATGCTTGGC
ACATGCCAAAAAAGAAAAACGAAGTGCACCATCATCCAGAGAAGGAGCTG
GTAAAAAACGATATTTCTGTGGAGCCCAATGTGCACCATCATGTGCCCCA
TCTTGTTCACCACAATGTTGTGCCTCCGCTCCAATGGCTGCCCCTATGCC
AATGGCTGCCCCAATGTGCGGTGGTATGGGATGTGGACCAATGGCTGCTC
CCATGGCTGCTCCATGCGGTGGTATGGGAGCTCCATGTGGTGGTATGGGT
GC Run BLAST on NCBI transcript from alignment at sc0004562:1..3456+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043773 ID=TCONS_00043773|Name=TCONS_00043773|organism=Clytia hemisphaerica|type=transcript|length=3456bp|location=Sequence derived from alignment at sc0004562:1..3456+ (Clytia hemisphaerica)
GCGATTCTGTGGTAAACACCGAACATATTATTTTACATTTCCAATCATAT
TTTTATAGTGGTAACATCAGATTAACGGTGTCGGATTTTCAAAGGTATGG
AATTTTTATGgatatttttaatctttttaaagcttTTACTGGTATATTTT
GTCATAATTTGCTGATTATGAAGGCGTGATTTGGGCACAATCCATTGACT
TATTCTGTTTAGAAACTTTCGAAtttaaattcttgattttttaaacattt
gcaTGCATCCATCCCAAAACAACGGAATTTATCACCAGTGAAATTGTTTA
AATCTAACGTAATTGAAAAATTCCAGACTTTCTTGGATCCTTCTGTTTCA
AAAGATAAGATAATGTTATGACTATCATGAATAAAGCCTTTNAATTGTTT
AAATCTAACGTAATTGAAAAATTCCAGACTTTCTTGGATCCTTCTGTTTC
AAAAGATAAGATAATgttatgaatatcatgaataaagccTTTTGGATGCA
TCCTAGATTGTCAAGAATTTCTTGTAATCTTGGTCACAAactattaattt
ttttaacattttcaattcattCAGGGATTGACCATGAAGCAGACTATCGC
AATCATCTTACTCGTTGCAGTATGCTTGGCACATGCCAAAAAAGGTATGT
CATTTATTTATCACTTCTAGTGTGGTAACATATTTTTCTCCACATTTCAA
GGGCAAATTTGATTCGATTTGGATTCTCCAAGAATTTAAGATACACTTAC
TTAAAAGAAAGATTTCCAAAAGTATTTCCAAGGTATAAAAAGGAGAGGGG
TTCCAAAATAAATCCAGCTTCGGGGCACTACACTTTCCTCcctacacccc
ttctcacagactcggtaggatttttcagccagtgggggttaaaaataacg
gactgaaactcgatgggggttttcccatgtttttttttatggctggggat
tcatattcttttgtcagaaaattgggcggggatgggaaaaatagcatgat
attttccagtgaggattggtttatgtGATTATTTTcggtggggacaaaaa
ttggagtataattttccactggggacgttatcttggccaatttttccagt
ggaaggAGTCCCAGtgtgtctgtgagaagggggtgttttgcTTCTGTGTC
CACGTTGCTGGATCCAAAACCAACTGATTTATGAGGGAGGGATCATCAAC
AAGTCTTTAAAAACTTAATCCGTTCAAATGAATGAAATCTGCTCTTTAGT
GTGATTCTTTTAGACCAGGTAACGGTGTCCCGTTTTGCtccgaaacaaaa
tgaagccattctattggttaaattcaatGTTTACGTCAtgtctaaccaat
agaatggcttaaTTTCGTTTCTTTCTATTCTAGTTTCTTGTTCACAATTC
AGTCACGCATGTTCGTTTCTAGTTTAGCAACTCGTTTTGTCATTCATTCG
TTCGTTTagtttcattcattcattcacttTGCATGTTTTTCCTTCTCATT
AACATCCGCATCTGTCATTGGCCTTCATTCGATACCTAGCTCGCTTTTTT
CATACACGCTTCTTTAGTAAGGACTTGAACGAGTAGACTTTTTTTATTGT
GGTCGACACTCtttttacactcttttttattataacaattttataagaac
agtgcGGCtcagaaaagtaaaagaaactaaagtctgtctcgaaataattt
gcagctggagaaagaaatggctgtaacttttgatagaattcgaatcaagt
tgcgattaagtgcttgttagaaagatattcgtgagtggaatattatcaag
taaaaaaattgagaaaaaaaaggaaaatgaaaatgaaaaatgaagaagaa
aaaaatcaacttcttgtagaaatgNtaaaattaccattttcacaggagtg
attcttcaatcttagatcatcatcactgtcaaaaaaattttcaaaaatat
tcattcattcaaaagatatcaaacaaaaattattgctagttgactctata
aaatagtaaaaactggtaaaaaacgacaaaaaaacagcctttcgtcgatc
aaccagcaataaactttgtttgatatcttttgattgaatgaatatttttg
aaaaattttttgacattgatgatgatctaagattgaagagtcactcctgt
gaaaatggtaattacaccacatttctacaaaaagttgatttttttcttct
tcatttttcattttcattttccttttttttctcaatttttttacttgata
atattccactcacgaatatctttctaacaagcacttaatcgcaacttgat
tcgaattctatcaaaagttacagccatttctttctccagctgcaaattat
ttcgagacagactttaggtcTTGAACATAAAAACATGGTAAAAGCAATTT
AATGCTCAAGAGTCAAAATACGGACCAAGCATTCTTATAAGAATCAGTGT
AATTGTGCTTCAGGTTATTGAATCAAGATAAGGGTATCATTAACactatt
ttcagcatttttctaTTCTTAAAACTGTTACAAAgaagtttacacgtttt
tttataagaacagactatataagaatataaggcttcgattgccaaaatat
taagaacaagttaagaacattttaatgctttggggacaaaaatgctctca
aaatgttgaaattaagaacacgttaagaacttttttaggcttaaagctcg
aaaggttaagaacatcctaaggcttcaaagattttggatattcttataaa
aaaacgtgtacttctcCAAAGTTCTTGTATAAAGAAAGGTGTATGAATTT
TGCGTTTTAGTGAAAGAGGCATACATGTACCACGGCAAAATTGTGACGTT
AGAAAAGGACGTTAAGACGGACGGTAAGGGACTCACTGCATTGACGTTAG
AATGAATGAAACTTCTCGACTTTATGACAACACACGCACGTACACTTTCT
CGTATCATCATTAAATAGAATTCTCTGCTCTGTTGCTCTTTTAAAACTAC
TGAGTCTAATATTTTTGAGTCTGAAAAGTTCTTTCTCTTGGGCATTCTTT
CAtcataaaaagtttgaaaacttGACTTTGAAACTTATgggatttttctt
tttccaaaatgcTGTCGTCTTTTAgttgaacaatttttgataaaatgatg
aTACTAAGTATTGACGGACTTTTACGATGACTGTTTAGTTTAGACTTCGA
CGCTTCTTTACTTCATAGAAAAACGAAGTGCACCATCATCCAGAGAAGGA
GCTGGTAAAAAACGATATTTCTGTGGAGCCCAATGTGCACCATCATGTGC
CCCATCTTGTTCACCACAATGTTGTGCCTCCGCTCCAATGGCTGCCCCTA
TGCCAATGGCTGCCCCAATGTGCGGTGGTATGGGATGTGGACCAATGGCT
GCTCCCATGGCTGCTCCATGCGGTGGTATGGGAGCTCCATGTGGTGGTAT
GGGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043773-exon-sc0004562-1491911889:1..94 | TCONS_00043773-exon-sc0004562-1491911889:1..94 | Clytia hemisphaerica | exon |
| TCONS_00043773-exon-sc0004562-1510915933:1..94 | TCONS_00043773-exon-sc0004562-1510915933:1..94 | Clytia hemisphaerica | exon |
| TCONS_00043773-exon-sc0004562-1575043694:1..94 | TCONS_00043773-exon-sc0004562-1575043694:1..94 | Clytia hemisphaerica | exon |
| TCONS_00043773-exon-sc0004562-1491911889:575..644 | TCONS_00043773-exon-sc0004562-1491911889:575..644 | Clytia hemisphaerica | exon |
| TCONS_00043773-exon-sc0004562-1510915933:575..644 | TCONS_00043773-exon-sc0004562-1510915933:575..644 | Clytia hemisphaerica | exon |
| TCONS_00043773-exon-sc0004562-1575043694:575..644 | TCONS_00043773-exon-sc0004562-1575043694:575..644 | Clytia hemisphaerica | exon |
| TCONS_00043773-exon-sc0004562-1491911889:3219..3456 | TCONS_00043773-exon-sc0004562-1491911889:3219..3456 | Clytia hemisphaerica | exon |
| TCONS_00043773-exon-sc0004562-1510915933:3219..3456 | TCONS_00043773-exon-sc0004562-1510915933:3219..3456 | Clytia hemisphaerica | exon |
| TCONS_00043773-exon-sc0004562-1575043694:3219..3456 | TCONS_00043773-exon-sc0004562-1575043694:3219..3456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004562 | supercontig | sc0004562:1..3456 + |
Blast
The following BLAST results are available for this feature:
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