TCONS_00043769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043769
Unique NameTCONS_00043769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length158

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043769 ID=TCONS_00043769|Name=TCONS_00043769|organism=Clytia hemisphaerica|type=transcript|length=158bp
AAAAGATCCTTGCGCTTTTGTCTACGCGCATCCAGAACCTTAGTTCTAAC
TAACTTCTGATCATACCCACGTTTAATCAGCCATGTCTCCAGTTCGTTGC
AACGTAAGTCGAATTCATGGGGCTCCGAGCAGATGCGATGAAGTCTAAGA
GCCTGACT
Run BLAST on NCBI

transcript from alignment at sc0004558:5851..6008

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043769 ID=TCONS_00043769|Name=TCONS_00043769|organism=Clytia hemisphaerica|type=transcript|length=158bp|location=Sequence derived from alignment at sc0004558:5851..6008 (Clytia hemisphaerica)
AGTCAGGCTCTTAGACTTCATCGCATCTGCTCGGAGCCCCATGAATTCGA
CTTACGTTGCAACGAACTGGAGACATGGCTGATTAAACGTGGGTATGATC
AGAAGTTAGTTAGAACTAAGGTTCTGGATGCGCGTAGACAAAAGCGCAAG
GATCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027445XLOC_027445Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043769-exon-sc0004558-1491911889:5851..6008TCONS_00043769-exon-sc0004558-1491911889:5851..6008Clytia hemisphaericaexon
TCONS_00043769-exon-sc0004558-1510915933:5851..6008TCONS_00043769-exon-sc0004558-1510915933:5851..6008Clytia hemisphaericaexon
TCONS_00043769-exon-sc0004558-1575043694:5851..6008TCONS_00043769-exon-sc0004558-1575043694:5851..6008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004558supercontigsc0004558:5851..6008 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top