TCONS_00043768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043768
Unique NameTCONS_00043768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043768 ID=TCONS_00043768|Name=TCONS_00043768|organism=Clytia hemisphaerica|type=transcript|length=797bp
GAGAAGTTCAACACAGTGTACAGAGCAATTTACACTAAGAACACGGGGCT
TTGCTCCCCGTGTTCCCGCCGTTAGAAGAGGTGATATTCTGCAAATCAAA
GGCAGAAATTTGTACAATCTTGGATATAGCCATTACGCCATTGTAGTGGA
TGATTGTTATGTCATACACGTGAAAAAAGTTGGAGGAAATACAATCATAG
CAAAAGAAAAGTTAGCAGAAgctttcaaaggaaaatttgtTAGGATAAAC
AACACGATGGATGGAGAATTTTCCGTACTTGACATACAAGATATCATTGT
GAGCGCTGAGAGCATGATTGGCCATGATAAATGGCCTTACGATCTGCTAG
CCCATAACTGTGAGCATTTTGTAACCTGATGCCGTTATGGAAAAAAGATT
TCGATGCAAACTTTATCCATAGTTGATTACTTTCTTTGCAGTGATCTCAC
AATGAAGGATTTTTCTCGTCTTTGGAAGGCTTCTATCAAAGGAAAATGGG
ATACCGGCACACAATGGATGAAGgCGAAGTACCATCACAGACCACGGACT
TGCAGACCATCAAGATCAATGGCCGGGgggtgttaaaaaaaatttaacac
cCCCTGGAAAGATGGTTCACATAGATTCGTtacaaaataaggaaaaaatg
aGGCCCCAGCGGCCAGCGGCAGACCAGGGGACCTCTGAAAACTTCAATCT
GGTGAACACAAGCATCGGGCTCAGTTCCTGATTGAAACCAAAAAAATAAG
GGCGGGATGAgggcaattaaaaaaaaagaaaaacaaacaaaacaaac
Run BLAST on NCBI

protein sequence of TCONS_00043768-protein

>TCONS_00043768-protein ID=TCONS_00043768-protein|Name=TCONS_00043768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
RSSTQCTEQFTLRTRGFAPRVPAVRRGDILQIKGRNLYNLGYSHYAIVVD
DCYVIHVKKVGGNTIIAKEKLAEAFKGKFVRINNTMDGEFSVLDIQDIIV
SAESMIGHDKWPYDLLAHNCEHFVT
Run BLAST on NCBI

transcript from alignment at sc0004556:430..1509+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043768 ID=TCONS_00043768|Name=TCONS_00043768|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at sc0004556:430..1509+ (Clytia hemisphaerica)
GAGAAGTTCAACACAGTGTACAGAGCAATTTACACTAAGAACACGGGGCT
TTGCTCCCCGTGTTCCCGCCGTTAGAAGAGGTGATATTCTGCAAATCAAA
GGCAGAAATTTGTACAATCTTGGATATAGCCATTACGCCATTGTAGTGGA
TGATTGTTATGTCATACACGTGAAAAAAGTTGGAGGAAATACAATCATAG
CAAAAGAAAAGTTAGCAGAAgctttcaaaggaaaatttgtTAGGATAAAC
AACACGATGGATGGAGAATTTTCCGTACTTGACATACAAGATATCATTGT
GAGCGCTGAGAGCATGATTGGCCATGATAAATGGCCTTACGATCTGCTAG
CCCATAACTGTGAGCATTTTGTAACCTGATGCCGTTATGGAAAAAAGATT
TCGATGCAAACTTTATCCATAGTTGATTACTTTCTTTGCAGTGATCTCAC
AATGAAGGATTTTTCTCGTCTTTGGAAGGCTTCTATCAAAGGAAAATGGG
ATACCGGCACACAATGGATGAAGgtatttatttattataattttcagAAT
gaattttcaagtaaaaatatcTGAGAGGGTTAAAAAAGtcagtaaatttc
aaaaaagtgtaTCTGGCAGGGTTGACTTACTATACACTGTGATTGCATGT
CATTGTATCCCAAGACACTTCCCTATCCTACATGTACTATAAATAGCTAG
CTCCTATCTGGGTCATCCATCCTTGAACGAGAGAACTTTCTTACTCTGat
gaattaaaaatttcaatgatttatcaattcttaatattttatcatttttc
atttaggCGAAGTACCATCACAGACCACGGACTTGCAGACCATCAAGATC
AATGGCCGGGgggtgttaaaaaaaatttaacaccCCCTGGAAAGATGGTT
CACATAGATTCGTtacaaaataaggaaaaaatgaGGCCCCAGCGGCCAGC
GGCAGACCAGGGGACCTCTGAAAACTTCAATCTGGTGAACACAAGCATCG
GGCTCAGTTCCTGATTGAAACCAAAAAAATAAGGGCGGGATGAgggcaat
taaaaaaaaagaaaaacaaacaaaacaaac

Coding sequence (CDS) from alignment at sc0004556:430..1509+

>TCONS_00043768 ID=TCONS_00043768|Name=TCONS_00043768|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0004556:430..1509+ (Clytia hemisphaerica)
AGAAGTTCAACACAGTGTACAGAGCAATTTACACTAAGAACACGGGGCTT
TGCTCCCCGTGTTCCCGCCGTTAGAAGAGGTGATATTCTGCAAATCAAAG
GCAGAAATTTGTACAATCTTGGATATAGCCATTACGCCATTGTAGTGGAT
GATTGTTATGTCATACACGTGAAAAAAGTTGGAGGAAATACAATCATAGC
AAAAGAAAAGTTAGCAGAAgctttcaaaggaaaatttgtTAGGATAAACA
ACACGATGGATGGAGAATTTTCCGTACTTGACATACAAGATATCATTGTG
AGCGCTGAGAGCATGATTGGCCATGATAAATGGCCTTACGATCTGCTAGC
CCATAACTGTGAGCATTTTGTAACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027444XLOC_027444Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043768-proteinTCONS_00043768-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043768-exon-sc0004556-1491911889:430..952TCONS_00043768-exon-sc0004556-1491911889:430..952Clytia hemisphaericaexon
TCONS_00043768-exon-sc0004556-1510915933:430..952TCONS_00043768-exon-sc0004556-1510915933:430..952Clytia hemisphaericaexon
TCONS_00043768-exon-sc0004556-1575043694:430..952TCONS_00043768-exon-sc0004556-1575043694:430..952Clytia hemisphaericaexon
TCONS_00043768-exon-sc0004556-1491911889:1236..1509TCONS_00043768-exon-sc0004556-1491911889:1236..1509Clytia hemisphaericaexon
TCONS_00043768-exon-sc0004556-1510915933:1236..1509TCONS_00043768-exon-sc0004556-1510915933:1236..1509Clytia hemisphaericaexon
TCONS_00043768-exon-sc0004556-1575043694:1236..1509TCONS_00043768-exon-sc0004556-1575043694:1236..1509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004556supercontigsc0004556:430..1509 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0813669	0	0.232716	0.0726218	0	0	0	0.0401836	1.04332	1.91696	0	0	0	0	0	0	0	0	0	0	0	0	0.082733	0	0.0669686	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007053LRAT-like_dom
Blast
[Close]
BLAST of TCONS_00043768 vs. Swiss-Prot (Human)
Match: HRSL4 (Retinoic acid receptor responder protein 3 OS=Homo sapiens GN=RARRES3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.847e-16
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 2 
Query:   74 RRGDILQIKGRNLYNLGYSHYAIVVDDCYVIHVKK------VGGNTI---------IAKEKLAEAFKGKFVRINNTMDGEFSVLDIQDIIVSAESMIGHDKWPYDLLAHNCEHFVT*CRYGK 394
            + GD+++I     + LGY H+A+ + D YVIH+         G +++         + +E+L +   G   R+NN++D E+    ++ II SA+ M+G  K  Y +++ NCEHFVT  RYGK
Sbjct:    9 KPGDLIEI-----FRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQ-KMKYSIVSRNCEHFVTQLRYGK 124
The following BLAST results are available for this feature:
BLAST of TCONS_00043768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HRSL43.847e-1633.61Retinoic acid receptor responder protein 3 OS=Homo... [more]
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