TCONS_00043747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043747
Unique NameTCONS_00043747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043747 ID=TCONS_00043747|Name=TCONS_00043747|organism=Clytia hemisphaerica|type=transcript|length=422bp
ATGGTGTTGAGACATGTTTTTGAGTTTGACATTTTGATATCgttttactt
tgatttcaatTCACATTCAAGTACATTTTTCATGGCAGTTTTCACACAGT
GACTACACTTGGGCAATCTGGTAAGCATTTATTCTAGTTATTTGACATTt
ataaattcagaaaatttacaaaaatatttattcaaaacttagattttcat
ttactttcttcttttcattggactttcatTGCACTCACGCACGTTCGTGC
TCAGGCTCTCTGGATCGTTTAGTCCTTTTCCTTATCATTGGCCTTgcctt
gttttcattttggctCAGTTCAGTTCATTTGCTGgccttcatttttcatt
tgcatTGCACGTTCGTGCCCTGGTTTCATGGTCTTCTCAGCTGTGTACTC
GTTTCGCCATTCTCATTCGCAC
Run BLAST on NCBI

transcript from alignment at sc0004526:1..422

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043747 ID=TCONS_00043747|Name=TCONS_00043747|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at sc0004526:1..422 (Clytia hemisphaerica)
GTGCGAATGAGAATGGCGAAACGAGTACACAGCTGAGAAGACCATGAAAC
CAGGGCACGAACGTGCAatgcaaatgaaaaatgaaggcCAGCAAATGAAC
TGAACTGagccaaaatgaaaacaaggcAAGGCCAATGATAAGGAAAAGGA
CTAAACGATCCAGAGAGCCTGAGCACGAACGTGCGTGAGTGCAatgaaag
tccaatgaaaagaagaaagtaaatgaaaatctaagttttgaataaatatt
tttgtaaattttctgaatttataAATGTCAAATAACTAGAATAAATGCTT
ACCAGATTGCCCAAGTGTAGTCACTGTGTGAAAACTGCCATGAAAAATGT
ACTTGAATGTGAattgaaatcaaagtaaaacGATATCAAAATGTCAAACT
CAAAAACATGTCTCAACACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027427XLOC_027427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043747-exon-sc0004526-1491911889:1..422TCONS_00043747-exon-sc0004526-1491911889:1..422Clytia hemisphaericaexon
TCONS_00043747-exon-sc0004526-1510915933:1..422TCONS_00043747-exon-sc0004526-1510915933:1..422Clytia hemisphaericaexon
TCONS_00043747-exon-sc0004526-1575043694:1..422TCONS_00043747-exon-sc0004526-1575043694:1..422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004526supercontigsc0004526:1..422 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.85902	4.00537	3.28642	3.49347	1.67152	0.532489	0.709496	1.26281	2.10401	1.07841	2.19375	1.48121	1.27212	1.60263	0.419907	0.786909	0.1824	1.19168	3.47936	2.45937	0.322084	0	0.657298	0.970632	0.357661	0.159602	0.22839	0	0.647212	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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