TCONS_00043745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043745
Unique NameTCONS_00043745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043745 ID=TCONS_00043745|Name=TCONS_00043745|organism=Clytia hemisphaerica|type=transcript|length=476bp
CTAGGGTGGTTTCTAAAAAgcattatttcattttgaagaatattatcAGA
AAGTTCATTGAGAGGCACTGGTTCTGTTGGTGGTTGATTGAGATCTAATT
TTTTAGTGATATTTATGAAGAATTCATTaaacatttttgcaatttctttA
TCATCTTTAATCAGCTCATCATTTTCGACTAAGGTTATTTTCTCACTTAT
TGGTCCTTTATTAGAGAAAAAAGGGCGCACagttttccaaaatcttttat
tGTCAGTGATTTGCTTTTCATCCAGAGATTCATAAAATCTTCTTTTAGTG
TTTCTCAGGAGATAAAAGCATCGGTTTCGCTGTTGGTTGTAATTATATTT
GTTGATGTTAGAGGGGTCTTTTCGTTTAATGTTATTAAGTCGAGATCGAT
GCATCATGACCTTTCGTAGTGATTTTGTCATGAAAGCTTTATCATTACCT
CTtagtattttagtttttatcggTGC
Run BLAST on NCBI

protein sequence of TCONS_00043745-protein

>TCONS_00043745-protein ID=TCONS_00043745-protein|Name=TCONS_00043745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
APIKTKILRGNDKAFMTKSLRKVMMHRSRLNNIKRKDPSNINKYNYNQQR
NRCFYLLRNTKRRFYESLDEKQITDNKRFWKTVRPFFSNKGPISEKITLV
ENDELIKDDKEIAKMFNEFFINITKKLDLNQPPTEPVPLNELSDNILQNE
IMLFRNHP
Run BLAST on NCBI

transcript from alignment at sc0004522:4996..5471

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043745 ID=TCONS_00043745|Name=TCONS_00043745|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at sc0004522:4996..5471 (Clytia hemisphaerica)
GCAccgataaaaactaaaatactaAGAGGTAATGATAAAGCTTTCATGAC
AAAATCACTACGAAAGGTCATGATGCATCGATCTCGACTTAATAACATTA
AACGAAAAGACCCCTCTAACATCAACAAATATAATTACAACCAACAGCGA
AACCGATGCTTTTATCTCCTGAGAAACACTAAAAGAAGATTTTATGAATC
TCTGGATGAAAAGCAAATCACTGACaataaaagattttggaaaactGTGC
GCCCTTTTTTCTCTAATAAAGGACCAATAAGTGAGAAAATAACCTTAGTC
GAAAATGATGAGCTGATTAAAGATGATaaagaaattgcaaaaatgtttAA
TGAATTCTTCATAAATATCACTAAAAAATTAGATCTCAATCAACCACCAA
CAGAACCAGTGCCTCTCAATGAACTTTCTgataatattcttcaaaatgaa
ataatgcTTTTTAGAAACCACCCTAG

Coding sequence (CDS) from alignment at sc0004522:4996..5471

>TCONS_00043745 ID=TCONS_00043745|Name=TCONS_00043745|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0004522:4996..5471 (Clytia hemisphaerica)
GCAccgataaaaactaaaatactaAGAGGTAATGATAAAGCTTTCATGAC
AAAATCACTACGAAAGGTCATGATGCATCGATCTCGACTTAATAACATTA
AACGAAAAGACCCCTCTAACATCAACAAATATAATTACAACCAACAGCGA
AACCGATGCTTTTATCTCCTGAGAAACACTAAAAGAAGATTTTATGAATC
TCTGGATGAAAAGCAAATCACTGACaataaaagattttggaaaactGTGC
GCCCTTTTTTCTCTAATAAAGGACCAATAAGTGAGAAAATAACCTTAGTC
GAAAATGATGAGCTGATTAAAGATGATaaagaaattgcaaaaatgtttAA
TGAATTCTTCATAAATATCACTAAAAAATTAGATCTCAATCAACCACCAA
CAGAACCAGTGCCTCTCAATGAACTTTCTgataatattcttcaaaatgaa
ataatgcTTTTTAGAAACCACCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027425XLOC_027425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043745-exon-sc0004522-1491911889:4996..5471TCONS_00043745-exon-sc0004522-1491911889:4996..5471Clytia hemisphaericaexon
TCONS_00043745-exon-sc0004522-1510915933:4996..5471TCONS_00043745-exon-sc0004522-1510915933:4996..5471Clytia hemisphaericaexon
TCONS_00043745-exon-sc0004522-1575043694:4996..5471TCONS_00043745-exon-sc0004522-1575043694:4996..5471Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043745-proteinTCONS_00043745-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004522supercontigsc0004522:4996..5471 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.30071	0.91122	2.23752	2.71088	0.408734	1.19323	1.68083	1.86132	0.140759	0.138695	0.807724	0.404388	0.499527	0.673771	0.592322	0.0809706	0	0.123912	1.97749	0.697051	1.17224	1.17483	0.152352	1.19201	0.373746	1.42102	0.614455	0.643837	1.06893	1.05182
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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