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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043744 ID=TCONS_00043744|Name=TCONS_00043744|organism=Clytia hemisphaerica|type=transcript|length=574bp
aagcaatagaaataacatagtatatacactttaaaactctttgcagcctt
atcaTAAGCCTTAAGTTGGGTTTTGGTGACGGTCGatgacggccgacaag
cctccagtcctcaccCTTGATGTACCTGTCGCAATCACACCAATGTTTTT
AGTTTGtcttaaatgttttaaattttctaattttctagtTGTCCCACATA
TTACTGACGCTATTCAAAATTGGATCAGAGAGGTAGCAAAGAAACCTGTT
GATGGCTCTGGAACAGAACCTGATATTTGTGTCATTGAACTTGGAGGTGT
TATTGGGGACATTGAGGGTATGCCATACATAGAAGCAATGCGACAACTCC
AATTTAAAGTTGGCGCAAAAGATTTTTGTAATTGTCATGTCAGTTTGATT
CCTGAGACTGCAGGAGGGGAGATGAAATCCAAGCCAACACAGATGAGTGT
CAGGGAACTCAGAGGTTGCGGTTTCACTCCTGATGTTGTAAGATTTACCC
ACCCagatttatcttttttcttacattttactTTCAAAAATCTACTAATA
TTTCAATAAACAGATGTGAATACA Run BLAST on NCBI protein sequence of TCONS_00043744-protein >TCONS_00043744-protein ID=TCONS_00043744-protein|Name=TCONS_00043744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MTADKPPVLTLDVPVAITPMFLVCLKCFKFSNFLVVPHITDAIQNWIREV
AKKPVDGSGTEPDICVIELGGVIGDIEGMPYIEAMRQLQFKVGAKDFCNC
HVSLIPETAGGEMKSKPTQMSVRELRGCGFTPDVVRFTHPDLSFFLHFTF
KNLLIFQ Run BLAST on NCBI transcript from alignment at sc0004522:120..1081- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043744 ID=TCONS_00043744|Name=TCONS_00043744|organism=Clytia hemisphaerica|type=transcript|length=962bp|location=Sequence derived from alignment at sc0004522:120..1081- (Clytia hemisphaerica)
AAGCAATAGAAATAACATAGTATATACACTTTAAAACTCTTTGCAGCCTT
ATCATAAGCCTTAAGTTGGGTTTTGGTGACGGTCGATGACGGCCGACAAG
CCTCCAGTCCTCACCCTTGATGTACCTGTCGCAATCACACCAATGTTTTT
AGTTTGTCTTAAATGTTTTAAATTTTCTAATTTTCTAGTTGTCCCACATA
TTACTGACGCTATTCAAAATTGGATCAGAGAGGTAGCAAAGAAACCTGTT
GATGGCTCTGGAACAGAACCTGATATTTGTGTCATTGAAGTAAGAATTGA
AATTTATTAGTCAAAAAGGATAAATGATATTTAAAAAAAGCTTTTCTCAT
TAATTTGCCTGCTCAGATGTAAATTTGAAAAGTAAGAAATTTGTTGTCCA
TTTTATCTTTAGCTTGGAGGTGTTATTGGGGACATTGAGGGTATGCCATA
CATAGAAGCAATGCGACAACTCCAATTTAAAGTTGGCGCAAAAGATTTTT
GTAATTGTCATGTCAGTTTGATTCCTGAGGTAAGTAATTAATACTTGATA
CAGTGTAGGCAAACCTGGATTTGGTCTAGACAAATCTAGTCAAATTATAG
AATCATCTTTGTGACATTATATGGAGCGTTAGACGCTAGTTTTTCGAGAG
TAATAGTACTTCATTTCTTTAATGAAAAAGTTACCAACAGCTAATATGGC
TTGTAACTATAACTGTATGCCTACTAACTGATAGCAAGATAAAATGTTTT
ACTAATTTGAACTAAATTCTTATATCCACGTATATGCATTTTAGACTGCA
GGAGGGGAGATGAAATCCAAGCCAACACAGATGAGTGTCAGGGAACTCAG
AGGTTGCGGTTTCACTCCTGATGTTGTAAGATTTACCCACCCAGATTTAT
CTTTTTTCTTACATTTTACTTTCAAAAATCTACTAATATTTCAATAAACA
GATGTGAATACA Coding sequence (CDS) from alignment at sc0004522:120..1081- >TCONS_00043744 ID=TCONS_00043744|Name=TCONS_00043744|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0004522:120..1081- (Clytia hemisphaerica)
ACTGCAGGAGGGGAGATGAAATCCAAGCCAACACAGATGAGTGTCAGGGA
ACTCAGAGGTTGCGGTTTCACTCCTGATGTTGTAAGATTTACCCACCCAG
ATTTATCTTTTTTCTTACATTTTACTTTCAAAAATCTACTAATATTTCAA
TAACTTGGAGGTGTTATTGGGGACATTGAGGGTATGCCATACATAGAAGC
AATGCGACAACTCCAATTTAAAGTTGGCGCAAAAGATTTTTGTAATTGTC
ATGTCAGTTTGATTCCTGAGATGACGGCCGACAAGCCTCCAGTCCTCACC
CTTGATGTACCTGTCGCAATCACACCAATGTTTTTAGTTTGTCTTAAATG
TTTTAAATTTTCTAATTTTCTAGTTGTCCCACATATTACTGACGCTATTC
AAAATTGGATCAGAGAGGTAGCAAAGAAACCTGTTGATGGCTCTGGAACA
GAACCTGATATTTGTGTCATTGAAACTGCAGGAGGGGAGATGAAATCCAA
GCCAACACAGATGAGTGTCAGGGAACTCAGAGGTTGCGGTTTCACTCCTG
ATGTTGTAAGATTTACCCACCCAGATTTATCTTTTTTCTTACATTTTACT
TTCAAAAATCTACTAATATTTCAATAACTTGGAGGTGTTATTGGGGACAT
TGAGGGTATGCCATACATAGAAGCAATGCGACAACTCCAATTTAAAGTTG
GCGCAAAAGATTTTTGTAATTGTCATGTCAGTTTGATTCCTGAGATGACG
GCCGACAAGCCTCCAGTCCTCACCCTTGATGTACCTGTCGCAATCACACC
AATGTTTTTAGTTTGTCTTAAATGTTTTAAATTTTCTAATTTTCTAGTTG
TCCCACATATTACTGACGCTATTCAAAATTGGATCAGAGAGGTAGCAAAG
AAACCTGTTGATGGCTCTGGAACAGAACCTGATATTTGTGTCATTGAAAC
TGCAGGAGGGGAGATGAAATCCAAGCCAACACAGATGAGTGTCAGGGAAC
TCAGAGGTTGCGGTTTCACTCCTGATGTTGTAAGATTTACCCACCCAGAT
TTATCTTTTTTCTTACATTTTACTTTCAAAAATCTACTAATATTTCAATA
ACTTGGAGGTGTTATTGGGGACATTGAGGGTATGCCATACATAGAAGCAA
TGCGACAACTCCAATTTAAAGTTGGCGCAAAAGATTTTTGTAATTGTCAT
GTCAGTTTGATTCCTGAGATGACGGCCGACAAGCCTCCAGTCCTCACCCT
TGATGTACCTGTCGCAATCACACCAATGTTTTTAGTTTGTCTTAAATGTT
TTAAATTTTCTAATTTTCTAGTTGTCCCACATATTACTGACGCTATTCAA
AATTGGATCAGAGAGGTAGCAAAGAAACCTGTTGATGGCTCTGGAACAGA
ACCTGATATTTGTGTCATTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043744-exon-sc0004522-1575043694:793..1081 | TCONS_00043744-exon-sc0004522-1575043694:793..1081 | Clytia hemisphaerica | exon |
| TCONS_00043744-exon-sc0004522-1575043694:553..669 | TCONS_00043744-exon-sc0004522-1575043694:553..669 | Clytia hemisphaerica | exon |
| TCONS_00043744-exon-sc0004522-1575043694:120..287 | TCONS_00043744-exon-sc0004522-1575043694:120..287 | Clytia hemisphaerica | exon |
| TCONS_00043744-exon-sc0004522-1510915933:793..1081 | TCONS_00043744-exon-sc0004522-1510915933:793..1081 | Clytia hemisphaerica | exon |
| TCONS_00043744-exon-sc0004522-1510915933:553..669 | TCONS_00043744-exon-sc0004522-1510915933:553..669 | Clytia hemisphaerica | exon |
| TCONS_00043744-exon-sc0004522-1510915933:120..287 | TCONS_00043744-exon-sc0004522-1510915933:120..287 | Clytia hemisphaerica | exon |
| TCONS_00043744-exon-sc0004522-1491911889:793..1081 | TCONS_00043744-exon-sc0004522-1491911889:793..1081 | Clytia hemisphaerica | exon |
| TCONS_00043744-exon-sc0004522-1491911889:553..669 | TCONS_00043744-exon-sc0004522-1491911889:553..669 | Clytia hemisphaerica | exon |
| TCONS_00043744-exon-sc0004522-1491911889:120..287 | TCONS_00043744-exon-sc0004522-1491911889:120..287 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004522 | supercontig | sc0004522:120..1081 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006221 | pyrimidine nucleotide biosynthetic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003883 | CTP synthase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006221 |
pyrimidine nucleotide biosynthetic process |
| molecular_function |
GO:0003883 |
CTP synthase activity |
Blast
BLAST of TCONS_00043744 vs. Swiss-Prot (Human)
Match: PYRG2 (CTP synthase 2 OS=Homo sapiens GN=CTPS2 PE=1 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 4.255e-40 Identity = 66/102 (64.71%), Postives = 80/102 (78.43%), Query Frame = 2
Query: 188 VVPHITDAIQNWIREVAKKPVDGSGTEPDICVIELGGVIGDIEGMPYIEAMRQLQFKVGAKDFCNCHVSLIPE-TAGGEMKSKPTQMSVRELRGCGFTPDVV 490
VVPHITDA+Q W+ AK PVDG+ EP ICVIELGG IGDIEGMP++EA RQ QFK ++FCN HVSL+P+ +A GE K+KPTQ SVR LRG G +PD++
Sbjct: 113 VVPHITDAVQEWVMNQAKVPVDGNKEEPQICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHVSLVPQLSATGEQKTKPTQNSVRALRGLGLSPDLI 214
The following BLAST results are available for this feature:
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