TCONS_00043733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043733
Unique NameTCONS_00043733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043733 ID=TCONS_00043733|Name=TCONS_00043733|organism=Clytia hemisphaerica|type=transcript|length=705bp
TGTGGCTGATGGCGAAAGTTGGGTCATAATGATTCCAAGAGCAGAACAAA
CCAAATCAAATGAACCTTTAATTGTGAATCGTGAGAAGAGACGCAATGAT
ATaaatttattaagaaaaaataGCAGACAAACGAGTATACAATCAAAGAG
ATTTCGACTGGAAAAACCACTCCAAGCGGAGCATTATGAtcaggaaaaag
tcaaaatgatgACCAAAAATATCCTCAGGAAGGGTAAAGATACTCAAAAT
CATTTGAAATACTTAAGAAATGCTTTCGCTGAATCGTGTCAGAACATTGA
TGCTTTTTTGGAGGTTGACAATGCCCTTTACACACTTGTTGGGTATTTAA
CTGGCAACAATACAACATTACAATTAGAAGCTGTTTGGTGTTTAACAAAT
ATCACTGctaatgaaaatcaaaatattgaaacctTCGTGAAAGCTACTTC
AGCATACTTGATTACTTTCTTGAAAAGTGGGAGTGTTCTCTTACAAGATC
AAAGTGCATGGGCATTGGGTAATATGGCAGCTGATAGCCATAACATTAGG
GAAATATTGAAAGCTCAAGGGATTGTGAAGCCACTCACTGAACTGGTTGA
GgtaattgtttttattcttttgatatGGTATGATATGACCAGAATTCACT
CCTTGCTTTATCGTCATTAAATCATGCCCATAGTTTGTTCATATATAaat
attcg
Run BLAST on NCBI

protein sequence of TCONS_00043733-protein

>TCONS_00043733-protein ID=TCONS_00043733-protein|Name=TCONS_00043733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
VADGESWVIMIPRAEQTKSNEPLIVNREKRRNDINLLRKNSRQTSIQSKR
FRLEKPLQAEHYDQEKVKMMTKNILRKGKDTQNHLKYLRNAFAESCQNID
AFLEVDNALYTLVGYLTGNNTTLQLEAVWCLTNITANENQNIETFVKATS
AYLITFLKSGSVLLQDQSAWALGNMAADSHNIREILKAQGIVKPLTELVE
VIVFILLIWYDMTRIHSLLYRH
Run BLAST on NCBI

transcript from alignment at sc0004515:2917..6299+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043733 ID=TCONS_00043733|Name=TCONS_00043733|organism=Clytia hemisphaerica|type=transcript|length=3383bp|location=Sequence derived from alignment at sc0004515:2917..6299+ (Clytia hemisphaerica)
TGTGGCTGATGGCGAAAGTTGGGTCATAATGATTCCAAGAGCAGAACAAA
CCAAATCAAATGAACCTTTAATTGTGAATCGTGAGAAGAGACGCAATGAT
ATaaatttattaagaaaaaataGCAGACAAACGAGTATACAATCAAAGAG
GTTTGTACTAttttttgtcttgttttttGGTGGAGAGATGAGACAgccat
cgaaaaaatgctctgttcgcatgggtgttaaaaatgcatgcggatGGACG
GGTGGTCGAAAAAATTCCTgggtttttttaaatcacacCAGTAATTCCAG
TGCTtcaaataaggaaatttcagtacgTGTTCGGTAATTTTTTGAGCGCA
ACGAAAATAATTTGAGCAAGCAAGCAAGGCcaaggccgatgaaatttata
tatgagtttaccgtcggcggcccgcatctctaaaaagcacccgcatgaaa
atttcattattttcaaaattcataaatttttcattatttccatatttctt
tacaactacaacctCTATCTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCCCATATATCTGCCAAACAGCCCTGACcgtcattttagttttttgcaa
aatctagcgccactgtagcaatcgatctttatttttcgttcgcaaaagat
gcgaagggttgaagcgaagcaaaattttttatNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaat
ttgaatatctttacaaccactaatcctctggaggcctatgacccctcatt
ttctttctttttcaaagctctacaagataggatagattttgaaaaaaaat
ttaaacttgaaaaatcttctggagttgctaccaAAGGCAAGGGGTCTGCT
GAGCAAGGGGTCTGGCAGAACCCCATTAGAAAAGTCTGAAATGACcttta
gattggctaaacaccAGTATTaatcagtgcgtcacaaacagccatatcac
atataaacaaaactcaacattctcacaaaagttgtctttttgatttccca
aacatttgtctaaagcgttcacttccacaataatttaatCTAATAGAATT
GCAATTTCgttcagtccacagtcggcttcaaaaTATACACATGtttttat
agaccttttttcaaagaggccaccctgttgaataattatgtagtccagca
gaaaaacaatgataaaaccatgcataattattacaatacNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNctctatcattgtttttatggctgg
actatataattattcaacaggacgtcctctttgaaaaaaggtctatttac
acaaccctcgacatggcccgagaattctttTATTGGAATGCGCATAAAGC
CCGAGCATGGCCCGAGCATGGCCCGAGTTTTCGGGCCACGGGCGGGCCTC
AGGCAGGCCACAggcgggccacacgcgggctaacttttgaaatcatgatt
taaacctgcgtgtaatttcaggactgcattttttcaatattttctctaga
aaaacttgatttcactgaaatatttgctattaaactggtcctggttttaa
actttgAAGCGTGGTCCACAAGGAGTTTGTTAAGTTTATTTAGCAAGATG
AACTGGATGAAACGCGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTGTCCCAAATCCACTAATATTTCATTCTAAACTATA
GCCAACTATCATTTTGCATGTTCCAAAGAATTACTTTAAAAGTGCTCAAA
ACAATAAATAAACTGCACTTCCTTCTAGATTTCGACTGGAAAAACCACTC
CAAGCGGAGCATTATGAtcaggaaaaagtcaaaatgatgACCAAAAATAT
CCTCAGGAAGGGTAAAGATACTCAAAATCATTTGAAATACTTAAGAAATG
CTTTCGCTGAATCGTGTCAGAACATTGATGCTTTTTTGGAGGTTGACAAT
GCCCTTTACACACTTGTTGGGTATTTAACTGGCAACAATACAACATTACA
ATTAGAAGCTGTTTGGTGTTTAACAAATATCACTGctaatgaaaatcaaa
atattgaaacctTCGTGAAAGCTACTTCAGCATACTTGATTACTTTCTTG
AAAAGTGGGAGTGTTCTCTTACAAGATCAAAGTGCATGGGCATTGGGTAA
TATGGCAGCTGATAGCCATAACATTAGGGAAATATTGAAAGCTCAAGGGA
TTGTGAAGCCACTCACTGAACTGGTTGAGgtaattgtttttattcttttg
atatGGTATGATATGACCAGAATTCACTCCTTGCTTTATCGTCATTAAAT
CATGCCCATAGTTTGTTCATATATAaatattcg

Coding sequence (CDS) from alignment at sc0004515:2917..6299+

>TCONS_00043733 ID=TCONS_00043733|Name=TCONS_00043733|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at sc0004515:2917..6299+ (Clytia hemisphaerica)
GTGGCTGATGGCGAAAGTTGGGTCATAATGATTCCAAGAGCAGAACAAAC
CAAATCAAATGAACCTTTAATTGTGAATCGTGAGAAGAGACGCAATGATA
TaaatttattaagaaaaaataGCAGACAAACGAGTATACAATCAAAGAGA
TTTCGACTGGAAAAACCACTCCAAGCGGAGCATTATGAtcaggaaaaagt
caaaatgatgACCAAAAATATCCTCAGGAAGGGTAAAGATACTCAAAATC
ATTTGAAATACTTAAGAAATGCTTTCGCTGAATCGTGTCAGAACATTGAT
GCTTTTTTGGAGGTTGACAATGCCCTTTACACACTTGTTGGGTATTTAAC
TGGCAACAATACAACATTACAATTAGAAGCTGTTTGGTGTTTAACAAATA
TCACTGctaatgaaaatcaaaatattgaaacctTCGTGAAAGCTACTTCA
GCATACTTGATTACTTTCTTGAAAAGTGGGAGTGTTCTCTTACAAGATCA
AAGTGCATGGGCATTGGGTAATATGGCAGCTGATAGCCATAACATTAGGG
AAATATTGAAAGCTCAAGGGATTGTGAAGCCACTCACTGAACTGGTTGAG
gtaattgtttttattcttttgatatGGTATGATATGACCAGAATTCACTC
CTTGCTTTATCGTCATTAAGTGGCTGATGGCGAAAGTTGGGTCATAATGA
TTCCAAGAGCAGAACAAACCAAATCAAATGAACCTTTAATTGTGAATCGT
GAGAAGAGACGCAATGATATaaatttattaagaaaaaataGCAGACAAAC
GAGTATACAATCAAAGAGATTTCGACTGGAAAAACCACTCCAAGCGGAGC
ATTATGAtcaggaaaaagtcaaaatgatgACCAAAAATATCCTCAGGAAG
GGTAAAGATACTCAAAATCATTTGAAATACTTAAGAAATGCTTTCGCTGA
ATCGTGTCAGAACATTGATGCTTTTTTGGAGGTTGACAATGCCCTTTACA
CACTTGTTGGGTATTTAACTGGCAACAATACAACATTACAATTAGAAGCT
GTTTGGTGTTTAACAAATATCACTGctaatgaaaatcaaaatattgaaac
ctTCGTGAAAGCTACTTCAGCATACTTGATTACTTTCTTGAAAAGTGGGA
GTGTTCTCTTACAAGATCAAAGTGCATGGGCATTGGGTAATATGGCAGCT
GATAGCCATAACATTAGGGAAATATTGAAAGCTCAAGGGATTGTGAAGCC
ACTCACTGAACTGGTTGAGgtaattgtttttattcttttgatatGGTATG
ATATGACCAGAATTCACTCCTTGCTTTATCGTCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027415XLOC_027415Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043733-proteinTCONS_00043733-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043733-exon-sc0004515-1491911889:2917..3066TCONS_00043733-exon-sc0004515-1491911889:2917..3066Clytia hemisphaericaexon
TCONS_00043733-exon-sc0004515-1510915933:2917..3066TCONS_00043733-exon-sc0004515-1510915933:2917..3066Clytia hemisphaericaexon
TCONS_00043733-exon-sc0004515-1575043694:2917..3066TCONS_00043733-exon-sc0004515-1575043694:2917..3066Clytia hemisphaericaexon
TCONS_00043733-exon-sc0004515-1491911889:5745..6299TCONS_00043733-exon-sc0004515-1491911889:5745..6299Clytia hemisphaericaexon
TCONS_00043733-exon-sc0004515-1510915933:5745..6299TCONS_00043733-exon-sc0004515-1510915933:5745..6299Clytia hemisphaericaexon
TCONS_00043733-exon-sc0004515-1575043694:5745..6299TCONS_00043733-exon-sc0004515-1575043694:5745..6299Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004515supercontigsc0004515:2917..6299 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.5331	25.5277	23.5066	24.7559	3.44672	4.22989	3.46814	2.68222	7.2707	5.49964	6.78303	6.07836	8.87343	5.73039	7.82454	9.62962	7.59055	8.08787	8.71843	8.3537	7.0302	7.88669	22.4494	16.2891	6.75159	7.1728	8.51765	6.67403	9.10264	14.673
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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