TCONS_00043732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043732
Unique NameTCONS_00043732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043732 ID=TCONS_00043732|Name=TCONS_00043732|organism=Clytia hemisphaerica|type=transcript|length=1410bp
CACTCGTTCATTAAGTTTCATTCTCTTATTATTCTTGTTTATGTATTTCC
TactaattttcttatttatgaTTGACCgcattaaaaattgaatttgagtt
CACCACCCAATATAAAAATTCGTTTTTAAGAATGCATACATNATGATTGA
CCgcattaaaaattgaatttgagttCACCACCCAATATAAAAATTCGTTT
TTAAGAATGCATACATATTAAGAAACATTAATAAAAAGTCACAACATTGA
AGATGTTGCAAACTGTGGTCATTCTGTTGTTATCACTGGTTGGACATGCT
GTTTCAGTTGCATACAGCAAGGATTACCTTGACCTAATGGACAAAACAGT
GACCAAAGACTTGAAGCAATATTATGTCGATGgaacaaattttcttattt
ctctAAACCTCCTTGTAAGAAAAATTCCTGCAGAAGATATTCCTCTATTT
ACCTTGGAGGATAATGGAGCTACAATATTTGGTATCTCAATTACAGACCA
AAAATTATCATATCAAaccaaattcaaaaaagatACTTTACCCTTGTCGT
ATAATCAATCTAAACCACTTAATATTAGATTTAAACAAGAAAATGGTGTA
ATCACTGTCTTTCGCAACTGTGCTTTGATCTATCAAGAAAGTGGTGTAAA
GAAAACAGACCTCGATTTTAAAGATTATACTCAAAGAAATTCGTTTTATT
TTCATGAGCACATCAATTTGTGCCATGCAAGATATTATCCTTTTATCAAT
CAAGTTGGAGCATGTCAACCAGCCATTTGTGAACCAGTTTCTGATAAGaA
TCATGCATGATTATCTATTTTGTAAAACTACTAATCAGACACTCTGACAA
ACTACTAAAACACATTTACAAAGAATCTTGATTTCAACAATGATCGAAAA
AGAAGAGGTGTATTGACAATAGAACTTGGTGAAGTGAATTTCGAGATTGC
AACACCACCTCCTGGTGTAAGTATAGAAAGCAAGTTATAACCAGGGGGGG
TACagccgcagggtactaacccatagggtactaacctgatttttaagaaa
aattgtcttaggtaccaccaccccctttttagtaccgggtactttttttt
tcttaaggaaaaagggacccccaccccctttttagtaccgggtaccgGCT
TTAAAATTACCAAGGAAAATAGGAGACACCACCCTTAAAACTTGCCAAGC
ATGGTCCCAATCTTTCCAAAGCCAGCAAAAGCAGCTCTTTGTTGTTATTA
TGACTTGTATATACCATGTTTTTAATTCAGATCctctaaaaagttcttta
aatcaAACACAGCTTTTAATTACAAAGGTAAAACAACAAAATTCCttggc
aaaagtaaaatattatatagctgTAATAACGGCACTTCTATCAGAAGATG
TAAAAATcaa
Run BLAST on NCBI

protein sequence of TCONS_00043732-protein

>TCONS_00043732-protein ID=TCONS_00043732-protein|Name=TCONS_00043732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MLQTVVILLLSLVGHAVSVAYSKDYLDLMDKTVTKDLKQYYVDGTNFLIS
LNLLVRKIPAEDIPLFTLEDNGATIFGISITDQKLSYQTKFKKDTLPLSY
NQSKPLNIRFKQENGVITVFRNCALIYQESGVKKTDLDFKDYTQRNSFYF
HEHINLCHARYYPFINQVGACQPAICEPVSDKNHA
Run BLAST on NCBI

transcript from alignment at sc0004514:3615..6317-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043732 ID=TCONS_00043732|Name=TCONS_00043732|organism=Clytia hemisphaerica|type=transcript|length=2703bp|location=Sequence derived from alignment at sc0004514:3615..6317- (Clytia hemisphaerica)
CACTCGTTCATTAAGTTTCATTCTCTTATTATTCTTGTTTATGTATTTCC
TACTAATTTTCTTATTTATGATTGACCGCATTAAAAATTGAATTTGAGTT
CACCACCCAATATAAAAATTCGTTTTTAAGAATGCATACATNATGATTGA
CCGCATTAAAAATTGAATTTGAGTTCACCACCCAATATAAAAATTCGTTT
TTAAGAATGCATACATATTAAGAAACATTAATAAAAAGTCACAACATTGA
AGATGTTGCAAACTGTGGTCATTCTGTTGTTATCACTGGTTGGACATGCT
GTTTCAGGTAATAACCTTTTCCATGTATATTATCTAGCTGCCTAAAAATG
CTTTATTTTGTAAAATATTAAATTTGAATCGATTTCATTTTAATATTGAA
AATCTTGGCATACATATTACATACAACCAGATTGTCTAGACATTGTGGGT
TATATTACTAATTGCTGACAATCACAATTATATTCAATCACATATCAATC
TTCATCAAACTTACATATTATTTAAATTTCTATTTCCAGTTGCATACAGC
AAGGATTACCTTGACCTAATGGACAAAACAGTGACCAAAGACTTGAAGCA
ATATTATGTCGATGGAACAAATTTTCTTATTTCTCTAAACCTCCTTGTAA
GAAAAATTCCTGCAGAAGATATTCCTCTATTTACCTTGGAGGATAATGGA
GCTACAATATTTGGTATCTCAATTACAGACCAAAAATTATCATATCAAAC
CAAATTCAAAAAAGATACTTTACCCTTGTCGTATAATCAATCTAAACCAC
TTAATATTAGATTTAAACAAGAAAATGGTGTAATCACTGTCTTTCGCAAC
TGTGCTTTGATCTATCAAGAAAGTGGTGTAAAGAAAACAGACCTCGATTT
TAAAGATTATACTCAAAGAAATTCGTTTTATTTTCATGAGCACGTGAGTA
GTTTTAATAGTCTCAATCTAGTTTTAAATTACCTTTAAAGGGAAGAAATT
TTGGCTTATGGAAATTTTGATTATGAGTCCTTTTTTCTGTGCATAAATTG
AAAAAGTTTTCAGTAAAATTATTTTTGTGTTCAAAAACTTCTTTGTATAG
ATATTATAGCTATATCTATTGTCTTTTACTTATTGATTTTAGATCAATTT
GTGCCATGCAAGATATTATCCTTTTATCAATCAAGTTGGAGCATGTCAAC
CAGCCATTTGTGAACCAGTTTCTGATAAGGTTTGTATATTGAAAACAATT
TTCCTGATTGAAAAGTATACTGATATCTTACTTTCAACCAAAGACTAGCT
AATCAATGACTACAATACAATCAAAGAGTAGAAAGACATAAAGTGTACTA
TAATTGTTGGTCTAATATCGACATCCCTCTTCTAGTTTCGACATCTTTCT
TTAGAGGTAGAAATAATAGGAAGGTCAGAATCACTGATTGAAACTAATTT
TCTTTGCTTCGCATTCAGAGAGGAAAAAATCTTGAGTCTCTCAGTGATTC
CGACCTTCCTAATATTCCTATCTTTAAAGAAGGGTGTCAAAATTAGAAGA
GGGATGTCAACATTAGACCAATAGTAATACAAAAGAAAACAAACATACAT
TTTACAGTAAAATATTGTTAAAATTGGATAATATCAGACCTGCAAAACCA
ACTGAACCTGACTGAACAAGTCAATCATCTATTTTCTATTCTCCTTTAAA
CTTTGGAATAATAACACAACCATATGCTGAGAAACCAAACTTTTGAATTT
GATTTTTCAGAATCATGCATGATTATCTATTTTGTAAAACTACTAATCAG
ACACTCTGACAAACTACTAAAACACATTTACAAAGGTATGCATTCACATA
AGTTATCTGGCTATCTTGTCATCCTTTGTCTCATTATTTTGCTTTATGCT
GCATTTTATCATCACTCTAATAAATAATATATAATCACATACAATAAAAT
GTTTAGTATTCTTGACGTCAATTTTTGACGAAGACCCTGCACTTGTATTT
TTTGTAAGAAGAACGGAACTCTAGTCTTAAAAAATTTGTATTTTCAACTG
AGGATTGTTTGAATAAGACATGAAACTGTCAGTACTTCCACTGCTTCAAT
TATCATATTCTCGATCACACATAATATTATTAAAAATGATATTATTGAAT
AGCAATTATCTTTTAGAATCTTGATTTCAACAATGATCGAAAAAGAAGAG
GTGTATTGACAATAGAACTTGGTGAAGTGAATTTCGAGATTGCAACACCA
CCTCCTGGTGTAAGTATAGAAAGCAAGTTATAACCAGGGGGGGTACAGCC
GCAGGGTACTAACCCATAGGGTACTAACCTGATTTTTAAGAAAAATTGTC
TTAGGTACCACCACCCCCTTTTTAGTACCGGGTACTTTTTTTTTCTTAAG
GAAAAAGGGACCCCCACCCCCTTTTTAGTACCGGGTACCGGCTTTAAAAT
TACCAAGGAAAATAGGAGACACCACCCTTAAAACTTGCCAAGCATGGTCC
CAATCTTTCCAAAGCCAGCAAAAGCAGCTCTTTGTTGTTATTATGACTTG
TATATACCATGTTTTTAATTCAGATCCTCTAAAAAGTTCTTTAAATCAAA
CACAGCTTTTAATTACAAAGGTAAAACAACAAAATTCCTTGGCAAAAGTA
AAATATTATATAGCTGTAATAACGGCACTTCTATCAGAAGATGTAAAAAT
CAA

Coding sequence (CDS) from alignment at sc0004514:3615..6317-

>TCONS_00043732 ID=TCONS_00043732|Name=TCONS_00043732|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at sc0004514:3615..6317- (Clytia hemisphaerica)
AATCATGCATGAATCAATTTGTGCCATGCAAGATATTATCCTTTTATCAA
TCAAGTTGGAGCATGTCAACCAGCCATTTGTGAACCAGTTTCTGATAAGT
TGCATACAGCAAGGATTACCTTGACCTAATGGACAAAACAGTGACCAAAG
ACTTGAAGCAATATTATGTCGATGGAACAAATTTTCTTATTTCTCTAAAC
CTCCTTGTAAGAAAAATTCCTGCAGAAGATATTCCTCTATTTACCTTGGA
GGATAATGGAGCTACAATATTTGGTATCTCAATTACAGACCAAAAATTAT
CATATCAAACCAAATTCAAAAAAGATACTTTACCCTTGTCGTATAATCAA
TCTAAACCACTTAATATTAGATTTAAACAAGAAAATGGTGTAATCACTGT
CTTTCGCAACTGTGCTTTGATCTATCAAGAAAGTGGTGTAAAGAAAACAG
ACCTCGATTTTAAAGATTATACTCAAAGAAATTCGTTTTATTTTCATGAG
CACATGTTGCAAACTGTGGTCATTCTGTTGTTATCACTGGTTGGACATGC
TGTTTCAGAATCATGCATGAATCAATTTGTGCCATGCAAGATATTATCCT
TTTATCAATCAAGTTGGAGCATGTCAACCAGCCATTTGTGAACCAGTTTC
TGATAAGTTGCATACAGCAAGGATTACCTTGACCTAATGGACAAAACAGT
GACCAAAGACTTGAAGCAATATTATGTCGATGGAACAAATTTTCTTATTT
CTCTAAACCTCCTTGTAAGAAAAATTCCTGCAGAAGATATTCCTCTATTT
ACCTTGGAGGATAATGGAGCTACAATATTTGGTATCTCAATTACAGACCA
AAAATTATCATATCAAACCAAATTCAAAAAAGATACTTTACCCTTGTCGT
ATAATCAATCTAAACCACTTAATATTAGATTTAAACAAGAAAATGGTGTA
ATCACTGTCTTTCGCAACTGTGCTTTGATCTATCAAGAAAGTGGTGTAAA
GAAAACAGACCTCGATTTTAAAGATTATACTCAAAGAAATTCGTTTTATT
TTCATGAGCACATGTTGCAAACTGTGGTCATTCTGTTGTTATCACTGGTT
GGACATGCTGTTTCAGAATCATGCATGAATCAATTTGTGCCATGCAAGAT
ATTATCCTTTTATCAATCAAGTTGGAGCATGTCAACCAGCCATTTGTGAA
CCAGTTTCTGATAAGTTGCATACAGCAAGGATTACCTTGACCTAATGGAC
AAAACAGTGACCAAAGACTTGAAGCAATATTATGTCGATGGAACAAATTT
TCTTATTTCTCTAAACCTCCTTGTAAGAAAAATTCCTGCAGAAGATATTC
CTCTATTTACCTTGGAGGATAATGGAGCTACAATATTTGGTATCTCAATT
ACAGACCAAAAATTATCATATCAAACCAAATTCAAAAAAGATACTTTACC
CTTGTCGTATAATCAATCTAAACCACTTAATATTAGATTTAAACAAGAAA
ATGGTGTAATCACTGTCTTTCGCAACTGTGCTTTGATCTATCAAGAAAGT
GGTGTAAAGAAAACAGACCTCGATTTTAAAGATTATACTCAAAGAAATTC
GTTTTATTTTCATGAGCACATGTTGCAAACTGTGGTCATTCTGTTGTTAT
CACTGGTTGGACATGCTGTTTCAGAATCATGCATGAATCAATTTGTGCCA
TGCAAGATATTATCCTTTTATCAATCAAGTTGGAGCATGTCAACCAGCCA
TTTGTGAACCAGTTTCTGATAAGTTGCATACAGCAAGGATTACCTTGACC
TAATGGACAAAACAGTGACCAAAGACTTGAAGCAATATTATGTCGATGGA
ACAAATTTTCTTATTTCTCTAAACCTCCTTGTAAGAAAAATTCCTGCAGA
AGATATTCCTCTATTTACCTTGGAGGATAATGGAGCTACAATATTTGGTA
TCTCAATTACAGACCAAAAATTATCATATCAAACCAAATTCAAAAAAGAT
ACTTTACCCTTGTCGTATAATCAATCTAAACCACTTAATATTAGATTTAA
ACAAGAAAATGGTGTAATCACTGTCTTTCGCAACTGTGCTTTGATCTATC
AAGAAAGTGGTGTAAAGAAAACAGACCTCGATTTTAAAGATTATACTCAA
AGAAATTCGTTTTATTTTCATGAGCACATGTTGCAAACTGTGGTCATTCT
GTTGTTATCACTGGTTGGACATGCTGTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027414XLOC_027414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043732-exon-sc0004514-1575043694:6011..6317TCONS_00043732-exon-sc0004514-1575043694:6011..6317Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1575043694:5375..5778TCONS_00043732-exon-sc0004514-1575043694:5375..5778Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1575043694:5089..5175TCONS_00043732-exon-sc0004514-1575043694:5089..5175Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1575043694:4483..4557TCONS_00043732-exon-sc0004514-1575043694:4483..4557Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1575043694:3615..4151TCONS_00043732-exon-sc0004514-1575043694:3615..4151Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1510915933:6011..6317TCONS_00043732-exon-sc0004514-1510915933:6011..6317Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1510915933:5375..5778TCONS_00043732-exon-sc0004514-1510915933:5375..5778Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1510915933:5089..5175TCONS_00043732-exon-sc0004514-1510915933:5089..5175Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1510915933:4483..4557TCONS_00043732-exon-sc0004514-1510915933:4483..4557Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1510915933:3615..4151TCONS_00043732-exon-sc0004514-1510915933:3615..4151Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1491911889:6011..6317TCONS_00043732-exon-sc0004514-1491911889:6011..6317Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1491911889:5375..5778TCONS_00043732-exon-sc0004514-1491911889:5375..5778Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1491911889:5089..5175TCONS_00043732-exon-sc0004514-1491911889:5089..5175Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1491911889:4483..4557TCONS_00043732-exon-sc0004514-1491911889:4483..4557Clytia hemisphaericaexon
TCONS_00043732-exon-sc0004514-1491911889:3615..4151TCONS_00043732-exon-sc0004514-1491911889:3615..4151Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043732-proteinTCONS_00043732-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004514supercontigsc0004514:3615..6317 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39958	0.498246	0.0156576	0.456788	1.71698	1.20984	1.13632	1.34838	0.523044	1.28903	1.20842	0.710666	0.216792	0	0.441127	0.216683	0.304118	0.446317	0.145451	0.490383	0	0	0.427272	1.95114	1.01576	0.379962	0.357736	0	0.607386	0.358024
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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